Tools for visualising microbial community amplicon data
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Updated
May 21, 2024 - R
Tools for visualising microbial community amplicon data
Various functions for analysis of microbial community data
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Metagenomics calibration R package
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
Interactive application to explore various ecological diversity metrics
Analysis for McLaren, Willis, and Callahan (2019)
๐ 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
Metabarcoding pipeline
Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen anรกlisis con asv de bacterias y de hongos (estos รบltimos poco explicados por Schloss en su SOP).
Statistical and Computational methods for Microbiome Studies.
Primer scripts to produce meaningful visualisations from pre-processed metabarcoding data
Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
This repository contains R scripts for data analyses and visualization.
short-read amplicon data visualization suite
Tesis licenciatura "Metataxonรณmica de bacterias comoindicador de la descarga de xenobiรณticos por el Anillo de Cenotes en el sedimento de manglar rojo"
๐๐๐ซ๐๐๐ is an R package designed for the ๐ฆ๐น๐ต๐ณ๐ข๐ค๐ต๐ช๐ฐ๐ฏ of barcode sequences. It efficiently ๐ค๐ญ๐ถ๐ด๐ต๐ฆ๐ณ๐ด these sequences and provides functionality for the calculation and visualization of ๐ต๐ช๐ฎ๐ฆ ๐ด๐ฆ๐ณ๐ช๐ฆ๐ด trajectories of the barcoded data.
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