R package for alignment-free analysis of genomic data
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Updated
Dec 8, 2022 - R
R package for alignment-free analysis of genomic data
web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.
📉 Disk Storage of Compressed k-mer Dictionaries, with or without Random Access in Main Memory.
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE
Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data
rSWeeP is an alignment-free method for the vector representation of the biological sequences (amino acid and nucleotide).
Files from DIMACS 2007 DNA barcoding challenge
An ensemble method for predicting transcription factor in protein sequences
Supplementary data for "A survey and evaluations of histogram-based statistics in alignment-free sequence comparison"
Alignment-Free RGBT Salient Object Detection: Semantics-guided Asymmetric Correlation Network and A Unified Benchmark
Mapping-free software for fishing relevant reads in an RNA-Seq sample
Generalized k-mer return time distribution (RTD) calculation library
subset and spaced seed design tool
Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning
Alignment-free FASTQ deduplication.
Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data
A memory efficient tool to map and visualize evolutionary regions
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