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summarize_variants.py only handles 1 type of input #1

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tjbencomo opened this issue Jan 9, 2019 · 0 comments
Open

summarize_variants.py only handles 1 type of input #1

tjbencomo opened this issue Jan 9, 2019 · 0 comments

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@tjbencomo
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summarize_variants.py only accepts a file containing a list of vcf files as input (-I). Users may want to summarize a single vcf file, and it is annoying to make a text file containing the name of one file. Add functionality so that input can either be:

  1. File containing list of input vcfs
  2. A single input vcf specified by name
  3. Multiple vcfs specified by name i.e. -I input1.vcf input2.vcf
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@tjbencomo