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DESCRIPTION
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DESCRIPTION
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Type: Package
Package: tidySingleCellExperiment
Title: Brings SingleCellExperiment to the Tidyverse
Version: 1.15.4
Authors@R: c(person("Stefano", "Mangiola",
comment=c(ORCID="0000-0001-7474-836X"),
email="mangiolastefano@gmail.com",
role=c("aut", "cre")))
Description: 'tidySingleCellExperiment' is an adapter that abstracts
the 'SingleCellExperiment' container in the form of a 'tibble'.
This allows *tidy* data manipulation, nesting, and plotting.
For example, a 'tidySingleCellExperiment' is directly compatible
with functions from 'tidyverse' packages `dplyr` and `tidyr`,
as well as plotting with `ggplot2` and `plotly`.
In addition, the package provides various utility
functions specific to single-cell omics data analysis
(e.g., aggregation of cell-level data to pseudobulks).
License: GPL-3
Depends:
R (>= 4.4.0),
SingleCellExperiment
Imports:
dplyr,
tidyr,
ttservice (>= 0.4.0),
SummarizedExperiment,
tibble,
ggplot2,
magrittr,
rlang,
purrr,
pkgconfig,
lifecycle,
methods,
utils,
S4Vectors,
tidyselect,
ellipsis,
vctrs,
pillar,
stringr,
cli,
fansi,
Matrix,
stats
Suggests:
BiocStyle,
testthat,
knitr,
markdown,
rmarkdown,
SingleCellSignalR,
SingleR,
scater,
scran,
tidyHeatmap,
igraph,
GGally,
uwot,
celldex,
dittoSeq,
plotly
VignetteBuilder:
knitr
RdMacros:
lifecycle
Biarch: true
biocViews:
AssayDomain, Infrastructure, RNASeq, DifferentialExpression, SingleCell,
GeneExpression, Normalization, Clustering, QualityControl, Sequencing
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: https://github.com/stemangiola/tidySingleCellExperiment
BugReports: https://github.com/stemangiola/tidySingleCellExperiment/issues