config.yaml

# GUI settings
window_height: 1100             # height of the GUI window - adjust to fit your screen resolution
window_width: 1400              # width of the GUI window
# video specs
frame_rate: 119.88              # frame rate of your video data (n. frames per second)
# ladder rung analysis
likelihood_threshold: 0.1       # threshold of bodypart coordinate estimation likelihood, highlight estimates above threshold for ladder rung user validation
depth_threshold: 0.8            # percentage of recovery relative to depth of previous footfall / slip
threshold: ''                   # for threshold method in ladder rung
# kinematics analysis
lowpass_filter_cutoff: 6        # cutoff frequency for Butterworth filter applied to bodypart coordinate estimation in kinematics analysis
pixels_per_cm: ''               # provide px - cm ratio of the video, if known
cm_speed: ''                    # only for semi-automated kinematics analysis
px_to_cm_speed_ratio: 0.4806    # only for fully automated kinematics analysis
right_to_left: False            # direction of walking (False if animal walks from left to right)
no_outlier_filter: False        # only for spontaneous walking setup (requires more testing; True to get parameters for all step cycles)
dragging_filter: False          # only for spontaneous walking setup (requires more testing; False to get parameters also for potentially 100% dragging mice)