[python] Fix and refactor set_transform_to_* methods

[jp-dark]

The previous implementation of the set_transform_to_* methods in the Scene class had the validation on the transform input axes and output axes flipped. This fixes that bug and adds a generic set_transform_to_element method.

[codecov]

Codecov Report

Attention: Patch coverage is 92.59259% with 2 lines in your changes missing coverage. Please review.

Project coverage is 83.33%. Comparing base (58ca2d0) to head (e79e21c).
Report is 3 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #3205      +/-   ##
==========================================
+ Coverage   83.19%   83.33%   +0.13%     
==========================================
  Files          51       51              
  Lines        5504     5484      -20     
==========================================
- Hits         4579     4570       -9     
+ Misses        925      914      -11     

Flag	Coverage Δ
python	83.33% <92.59%> (+0.13%)	⬆️

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Components	Coverage Δ
python_api	83.33% <92.59%> (+0.13%)	⬆️
libtiledbsoma	∅ <ø> (∅)