Exercise feature-flag in unit tests

single-cell-data · Sep 6, 2024 · b0933d4 · b0933d4
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Showing 2 changed files with 15 additions and 3 deletions.
diff --git a/.github/workflows/python-ci-single.yml b/.github/workflows/python-ci-single.yml
@@ -129,13 +129,20 @@ jobs:
       env:
         TILEDB_SOMA_INIT_BUFFER_BYTES: 33554432 # accommodate tiny runners
 
-    - name: Run pytests for Python
+    - name: Run pytests for Python without new shape
       shell: bash
       # Setting PYTHONPATH ensures the tests load the in-tree source code under apis/python/src
       # instead of the copy we `pip install`ed to site-packages above. That's needed for the code
       # coverage analysis to work.
       run: PYTHONPATH=$(pwd)/apis/python/src python -m pytest --cov=apis/python/src --cov-report=xml apis/python/tests -v --durations=20
 
+    - name: Run pytests for Python with new shape
+      shell: bash
+      # Setting PYTHONPATH ensures the tests load the in-tree source code under apis/python/src
+      # instead of the copy we `pip install`ed to site-packages above. That's needed for the code
+      # coverage analysis to work.
+      run: export SOMA_PY_NEW_SHAPE=true; PYTHONPATH=$(pwd)/apis/python/src python -m pytest --cov=apis/python/src --cov-report=xml apis/python/tests -v --durations=20
+
     - name: Report coverage to Codecov
       if: inputs.report_codecov
       uses: codecov/codecov-action@v4

diff --git a/.github/workflows/r-ci.yml b/.github/workflows/r-ci.yml
@@ -148,10 +148,15 @@ jobs:
       #      -e "devtools::install(upgrade = FALSE)" \
       #      -e "testthat::test_local('tests/testthat', load_package = 'installed')"
 
-      - name: Test
+      - name: Test without new shape
         if: ${{ matrix.covr == 'no' }}
         run: cd apis/r/tests && Rscript testthat.R
-
+
+      # https://github.com/single-cell-data/TileDB-SOMA/issues/2407
+      - name: Test with new shape
+        if: ${{ matrix.covr == 'no' }}
+        run: export SOMA_R_NEW_SHAPE=true && cd apis/r/tests && Rscript testthat.R
+
       - name: Coverage
         if: ${{ matrix.os == 'ubuntu-latest' && matrix.covr == 'yes' && github.event_name == 'workflow_dispatch' }}
         run: apis/r/tools/r-ci.sh coverage