Use core 2.16, tiledb-py 0.22, tiledb-r 0.20 #2931
Workflow file for this run
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| name: TileDB-SOMA R CI | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - "apis/python/**" | |
| - ".pre-commit-config.yaml" | |
| push: | |
| branches: [main] | |
| env: | |
| COVERAGE_FLAGS: "r" | |
| COVERAGE_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| jobs: | |
| ci: | |
| strategy: | |
| matrix: | |
| include: | |
| - name: linux | |
| os: ubuntu-latest | |
| covr: 'no' | |
| - name: macos | |
| os: macOS-latest | |
| covr: 'no' | |
| - name: coverage | |
| os: ubuntu-latest | |
| covr: 'yes' | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Bootstrap | |
| run: cd apis/r && tools/r-ci.sh bootstrap | |
| - name: Dependencies | |
| run: cd apis/r && tools/r-ci.sh install_all | |
| - name: CMake | |
| uses: lukka/get-cmake@latest | |
| #- name: MkVars | |
| # run: mkdir ~/.R && echo "CXX17FLAGS=-Wno-deprecated-declarations -Wno-deprecated" > ~/.R/Makevars | |
| #- name: Build and install libtiledbsoma | |
| # run: sudo scripts/bld --prefix=/usr/local | |
| #- name: Call ldconfig | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # run: sudo ldconfig | |
| - name: Test | |
| if: ${{ matrix.covr == 'no' }} | |
| run: cd apis/r && tools/r-ci.sh run_tests | |
| - name: View Install Output | |
| run: cat $HOME/work/TileDB-SOMA/TileDB-SOMA/apis/r/tiledbsoma.Rcheck/00install.out | |
| if: failure() | |
| - name: Coverage | |
| if: ${{ matrix.os == 'ubuntu-latest' && matrix.covr == 'yes' }} | |
| run: cd apis/r && tools/r-ci.sh coverage |