Skip to content

[python] Initial work toward PyTorch data loaders #1

[python] Initial work toward PyTorch data loaders

[python] Initial work toward PyTorch data loaders #1

name: python-tiledbsoma-ml

Check failure on line 1 in .github/workflows/python-tiledbsoma-ml.yaml

View workflow run for this annotation

GitHub Actions / python-tiledbsoma-ml

Invalid workflow file

The workflow is not valid. .github/workflows/python-tiledbsoma-ml.yaml: Unexpected tag '!'**''
on:
pull_request:
branches: ["*"]
paths:
- !'**'
- 'other_packages/python/tiledbsoma_ml/**'
push:
branches: [main]
paths:
- !'**'
- 'other_packages/python/tiledbsoma_ml/**'
workflow_dispatch:
jobs:
lint:
runs-on: ubuntu-latest
env:
PYTHON_VERSION: "3.8"
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ env.PYTHON_VERSION }}
- name: Restore pre-commit cache
uses: actions/cache@v4
with:
path: ~/.cache/pre-commit
key: pre-commit-${{ hashFiles('.pre-commit-config.yaml') }}
- name: Install pre-commit
run: pip -v install pre-commit
- name: Run pre-commit hooks on all files
run: pre-commit run -v --files echo `git ls-files other_packages/python/tiledbsoma_ml`
tests:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
cache: pip
cache-dependency-path: python-spec/requirements-py${{ matrix.python-version }}.txt
- name: Install prereqs
run: |
pip install --upgrade pip wheel pytest pytest-cov setuptools
pip install .
- name: Run tests
working-directory: ./other_packages/python/tiledbsoma_ml/
run: |
pytest -s -v tests/