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Add classes for coordinate spaces and transforms (#218)
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New classes:

* Axis: simple data class storing a name, optional units, and optional scale
* CoordinateSpace: used to define coordinate spaces for spatial data
* CoordinateTransform: abstract base class for coordinate transforms
* AffineTransform: implementation for a generic affine coordinate transform
* ScaleTransform: implementation for a coordinate transform that scales axes (may be isotropic/uniform)
* IdentityTransform: implementation for an identity transform that only applies a name change to axes

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Co-authored-by: paul fisher <paul.fisher@tiledb.com>
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jp-dark and thetorpedodog authored Sep 18, 2024
1 parent 4b2ccca commit 9cb6f80
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14 changes: 14 additions & 0 deletions python-spec/src/somacore/__init__.py
Original file line number Diff line number Diff line change
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from .base import SOMAObject
from .collection import Collection
from .coordinates import AffineTransform
from .coordinates import Axis
from .coordinates import CoordinateSpace
from .coordinates import CoordinateTransform
from .coordinates import IdentityTransform
from .coordinates import ScaleTransform
from .coordinates import UniformScaleTransform
from .data import DataFrame
from .data import DenseNDArray
from .data import NDArray
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"AxisQuery",
"ExperimentAxisQuery",
"ContextBase",
"Axis",
"CoordinateSpace",
"CoordinateTransform",
"AffineTransform",
"ScaleTransform",
"UniformScaleTransform",
"IdentityTransform",
)
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