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Siegert Lab

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  1. MorphOMICs_legacy MorphOMICs_legacy Public archive

    Topological data analysis tool to map microglia morphology along sex- and brain-region-specific spectra

    Python 3 2

  2. morphOMICs morphOMICs Public

    morphOMICs is a topological data analysis approach which combines the Topological Morphology Descriptor (TMD) with bootstrapping approach, dimensionality reduction strategies to visualize microglia…

    Python 3 2

  3. Kilosort3 Kilosort3 Public

    Forked from MouseLand/Kilosort

    Fast spike sorting with drift correction for up to a thousand channels

    MATLAB

  4. umap umap Public

    Forked from lmcinnes/umap

    Uniform Manifold Approximation and Projection

    Python

  5. ripser ripser Public

    Forked from Ripser/ripser

    Ripser: efficient computation of Vietoris–Rips persistence barcodes

    C++

  6. TMD TMD Public

    Forked from BlueBrain/TMD

    A python package for the topological analysis of neurons.

    Python

Repositories

Showing 10 of 11 repositories
  • RGC-Quant Public

    Retinal Ganglion Cell (RGC) automatic counting in 3D confocal images using Deep Learning

    siegert-lab/RGC-Quant’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Sep 16, 2024
  • morphOMICs Public

    morphOMICs is a topological data analysis approach which combines the Topological Morphology Descriptor (TMD) with bootstrapping approach, dimensionality reduction strategies to visualize microglial morphological signatures and their relationships across different biological conditions.

    siegert-lab/morphOMICs’s past year of commit activity
    Python 3 GPL-3.0 2 2 0 Updated Jul 5, 2024
  • MorphOMICs_legacy Public archive

    Topological data analysis tool to map microglia morphology along sex- and brain-region-specific spectra

    siegert-lab/MorphOMICs_legacy’s past year of commit activity
    Python 3 GPL-3.0 2 0 0 Updated Mar 19, 2024
  • Data-Manager Public Forked from AminAlam/Data-Manager

    A web application which could efficiently store and search data, whilst also incorporating annotation features

    siegert-lab/Data-Manager’s past year of commit activity
    Python 0 2 0 0 Updated Mar 14, 2024
  • RHD_Electrophysiology Public Forked from AminAlam/ElecPhys

    Scripts and codes for conversion, preprocessing, and postprocessing of electrophysiology data recorded using RHD devices

    siegert-lab/RHD_Electrophysiology’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 6, 2024
  • Electrophysiology Public
    siegert-lab/Electrophysiology’s past year of commit activity
    0 0 0 0 Updated Feb 24, 2023
  • Kilosort3 Public Forked from MouseLand/Kilosort

    Fast spike sorting with drift correction for up to a thousand channels

    siegert-lab/Kilosort3’s past year of commit activity
    MATLAB 0 GPL-2.0 242 0 0 Updated Jan 23, 2023
  • scvi-tools Public Forked from scverse/scvi-tools

    Deep probabilistic analysis of single-cell omics data

    siegert-lab/scvi-tools’s past year of commit activity
    Python 0 BSD-3-Clause 350 0 0 Updated Jan 23, 2023
  • TMD Public Forked from BlueBrain/TMD

    A python package for the topological analysis of neurons.

    siegert-lab/TMD’s past year of commit activity
    Python 0 22 0 0 Updated Nov 14, 2022
  • umap Public Forked from lmcinnes/umap

    Uniform Manifold Approximation and Projection

    siegert-lab/umap’s past year of commit activity
    Python 0 BSD-3-Clause 815 0 0 Updated Nov 11, 2022
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