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Run test_count_call_alleles on Cubed (alternative approach) #1254

Merged
merged 7 commits into from
Sep 10, 2024
Merged

Run test_count_call_alleles on Cubed (alternative approach) #1254

merged 7 commits into from
Sep 10, 2024

Commits on Sep 3, 2024

  1. Add a --use-cubed option to pytest

    @tomwhite
    tomwhite committed Sep 3, 2024
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Commits on Sep 6, 2024

  1. Introduce sgkit.distarray to switch between Dask and Cubed

    @tomwhite
    tomwhite committed Sep 6, 2024
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  2. Use sgkit.distarray for count_call_alleles

    @tomwhite
    tomwhite committed Sep 6, 2024
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  3. Only rechunk in non-core dims in test_count_call_alleles__chunked

    @tomwhite
    tomwhite committed Sep 6, 2024
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  4. Fix coverage

    @tomwhite
    tomwhite committed Sep 6, 2024
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  5. Add GH actions workflow to test on Cubed

    @tomwhite
    tomwhite committed Sep 6, 2024
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Commits on Sep 9, 2024

  1. Don't allow chunking in ploidy dimension

    @tomwhite
    tomwhite committed Sep 9, 2024
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