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Change local alleles default to false #280

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merged 1 commit into from
Jul 29, 2024

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Will-Tyler
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Overview

vcf2zarr explode has a CLI option to create local-allele fields during the explode process. Currently, the CLI option's default value is true. This pull request changes the default value to false.

The default value should be false because the local alleles option is in an experimental stage of development. The current implementation does not save as much storage as hoped for and does not yet prevent the larger, global (non-local-allele) fields from being converted as well. See #277.

Testing

There are unit tests that test the default value of the local alleles option. I update those unit tests in this pull request.

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coveralls commented Jul 27, 2024

Coverage Status

coverage: 98.91% (-0.001%) from 98.911%
when pulling 4e0efca on Will-Tyler:local-alleles-default
into 7c78a14 on sgkit-dev:main.

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@jeromekelleher jeromekelleher left a comment

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Agreed 👍

@jeromekelleher jeromekelleher merged commit 6aaee4f into sgkit-dev:main Jul 29, 2024
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3 participants