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Bug in check_overlap when region spans whole file #146

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jeromekelleher opened this issue Apr 26, 2024 · 0 comments
Closed

Bug in check_overlap when region spans whole file #146

jeromekelleher opened this issue Apr 26, 2024 · 0 comments
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@jeromekelleher
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The validation code has picked out a problem where we can't check if partitions overlap when they are split across multiple files and the index doesn't know what the largest pos value is.

Run

python3 validation.py  -f -p4 validation-data/1kg_2020_others.vcf.gz.2.split

to reproduce
@jeromekelleher jeromekelleher added the bug Something isn't working label Apr 26, 2024
jeromekelleher added a commit to jeromekelleher/bio2zarr that referenced this issue Apr 26, 2024
@jeromekelleher
Workaround for issue sgkit-dev#146
1be6438
@jeromekelleher jeromekelleher mentioned this issue Apr 30, 2024
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jeromekelleher added a commit to jeromekelleher/bio2zarr that referenced this issue Apr 30, 2024
@jeromekelleher
Workaround for issue sgkit-dev#146
117ce93
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