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Wrap legacy APIs #2702

Merged
merged 47 commits into from
Dec 18, 2023
Merged

Wrap legacy APIs #2702

merged 47 commits into from
Dec 18, 2023

Commits on Oct 20, 2023

  1. check for legacy APIs

    @flying-sheep
    flying-sheep committed Oct 20, 2023
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  2. Fix one of them

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    flying-sheep committed Oct 20, 2023
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Commits on Nov 30, 2023

  1. Merge branch 'master' into short-apis

    @flying-sheep
    flying-sheep committed Nov 30, 2023
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  2. dca

    @flying-sheep
    flying-sheep committed Nov 30, 2023
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  3. Use explicit public modules

    @flying-sheep
    flying-sheep committed Nov 30, 2023
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  4. WIP validate signatures

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    flying-sheep committed Nov 30, 2023
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  5. Remaining sig conventions

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    flying-sheep committed Nov 30, 2023
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  6. pp legacy API

    @flying-sheep
    flying-sheep committed Nov 30, 2023
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  7. external legacy api

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    flying-sheep committed Nov 30, 2023
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  8. tl legacy api

    @flying-sheep
    flying-sheep committed Nov 30, 2023
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  9. pp and tl remaining legacy apis

    @flying-sheep
    flying-sheep committed Nov 30, 2023
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  10. Plot classes legacy API

    @flying-sheep
    flying-sheep committed Nov 30, 2023
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  11. more plots

    @flying-sheep
    flying-sheep committed Nov 30, 2023
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Commits on Dec 3, 2023

  1. anndata plots legacy APIs

    @flying-sheep
    flying-sheep committed Dec 3, 2023
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  2. external legacy API

    @flying-sheep
    flying-sheep committed Dec 3, 2023
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  3. paga legacy APIs

    @flying-sheep
    flying-sheep committed Dec 3, 2023
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  4. rest of legacy API

    @flying-sheep
    flying-sheep committed Dec 3, 2023
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  5. Remove undocumented from __all__

    @flying-sheep
    flying-sheep committed Dec 3, 2023
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  6. fix accidental sig change

    @flying-sheep
    flying-sheep committed Dec 3, 2023
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  7. Loosen too-restricted use of APIs

    @flying-sheep
    flying-sheep committed Dec 3, 2023
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  8. Fix for 3.9

    @flying-sheep
    flying-sheep committed Dec 3, 2023
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  9. Fix return types a bit

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    flying-sheep committed Dec 3, 2023
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  10. Fix _wraps_plot_scatter usage

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    flying-sheep committed Dec 3, 2023
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Commits on Dec 4, 2023

  1. maybe fix docs

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    flying-sheep committed Dec 4, 2023
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  2. Merge branch 'master' into short-apis

    @flying-sheep
    flying-sheep authored Dec 4, 2023
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  3. Merge branch 'master' into short-apis

    @flying-sheep
    flying-sheep authored Dec 4, 2023
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Commits on Dec 5, 2023

  1. no ArrayLike

    @flying-sheep
    flying-sheep committed Dec 5, 2023
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  2. layer typing

    @flying-sheep
    flying-sheep committed Dec 5, 2023
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  3. relnotes

    @flying-sheep
    flying-sheep committed Dec 5, 2023
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  4. WIP

    @flying-sheep
    flying-sheep committed Dec 5, 2023
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  5. rest

    @flying-sheep
    flying-sheep committed Dec 5, 2023
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  6. Better way to configure new rule

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    flying-sheep committed Dec 5, 2023
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Commits on Dec 7, 2023

  1. fix phenograph

    @flying-sheep
    flying-sheep committed Dec 7, 2023
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  2. neighbors init

    @flying-sheep
    flying-sheep committed Dec 7, 2023
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  3. Backwards compat

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    flying-sheep committed Dec 7, 2023
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Commits on Dec 14, 2023

  1. Unify plot return sections

    @flying-sheep
    flying-sheep committed Dec 14, 2023
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  2. Unify show behavior

    @flying-sheep
    flying-sheep committed Dec 14, 2023
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  3. add missing subsample function

    @flying-sheep
    flying-sheep committed Dec 14, 2023
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Commits on Dec 18, 2023

  1. relax dca API

    @flying-sheep
    flying-sheep committed Dec 18, 2023
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  2. Make all <=3

    @flying-sheep
    flying-sheep committed Dec 18, 2023
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  3. relax phate

    @flying-sheep
    flying-sheep committed Dec 18, 2023
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  4. relax trimap

    @flying-sheep
    flying-sheep committed Dec 18, 2023
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  5. relax groupby

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    flying-sheep committed Dec 18, 2023
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  6. relax embedding_density

    @flying-sheep
    flying-sheep committed Dec 18, 2023
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  7. Use FutureWarning

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    flying-sheep committed Dec 18, 2023
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  8. Merge branch 'master' into short-apis

    @flying-sheep
    flying-sheep authored Dec 18, 2023
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  9. merge ignore

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    flying-sheep committed Dec 18, 2023
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