packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2021},
  url = {https://www.R-project.org/},
}

@Manual{R-bayesplot,
  title = {bayesplot: Plotting for Bayesian Models},
  author = {Jonah Gabry and Tristan Mahr},
  year = {2021},
  note = {R package version 1.8.1},
  url = {https://mc-stan.org/bayesplot/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2021},
  note = {https://github.com/rstudio/bookdown},
}

@Manual{R-boot,
  title = {boot: Bootstrap Functions (Originally by Angelo Canty for S)},
  author = {Angelo Canty and Brian Ripley},
  year = {2021},
  note = {R package version 1.3-28},
  url = {https://CRAN.R-project.org/package=boot},
}

@Manual{R-cmdstanr,
  title = {cmdstanr: R Interface to CmdStan},
  author = {Jonah Gabry and Rok Češnovar},
  year = {2021},
  note = {https://mc-stan.org/cmdstanr},
}

@Manual{R-conflicted,
  title = {conflicted: An Alternative Conflict Resolution Strategy},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.0.4},
  url = {https://github.com/r-lib/conflicted},
}

@Manual{R-dagitty,
  title = {dagitty: Graphical Analysis of Structural Causal Models},
  author = {Johannes Textor and Benito {van der Zander} and Ankur Ankan},
  year = {2021},
  note = {http://www.dagitty.net},
}

@Manual{R-data.table,
  title = {data.table: Extension of `data.frame`},
  author = {Matt Dowle and Arun Srinivasan},
  year = {2021},
  note = {R package version 1.14.2},
  url = {https://CRAN.R-project.org/package=data.table},
}

@Manual{R-ggdag,
  title = {ggdag: Analyze and Create Elegant Directed Acyclic Graphs},
  author = {Malcolm Barrett},
  year = {2021},
  note = {R package version 0.2.3},
  url = {https://github.com/malcolmbarrett/ggdag},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2021},
  note = {R package version 3.3.5},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-loo,
  title = {loo: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models},
  author = {Aki Vehtari and Jonah Gabry and Mans Magnusson and Yuling Yao and Paul-Christian Bürkner and Topi Paananen and Andrew Gelman},
  year = {2020},
  note = {https://mc-stan.org/loo/},
}

@Manual{R-patchwork,
  title = {patchwork: The Composer of Plots},
  author = {Thomas Lin Pedersen},
  year = {2020},
  note = {R package version 1.1.1},
  url = {https://CRAN.R-project.org/package=patchwork},
}

@Manual{R-posterior,
  title = {posterior: Tools for Working with Posterior Distributions},
  author = {Paul-Christian Bürkner and Jonah Gabry and Matthew Kay and Aki Vehtari},
  year = {2021},
  note = {https://mc-stan.org/posterior/},
}

@Manual{R-rethinking,
  title = {rethinking: Statistical Rethinking book package},
  author = {Richard McElreath},
  year = {2020},
  note = {R package version 2.13},
}

@Manual{R-rprojroot,
  title = {rprojroot: Finding Files in Project Subdirectories},
  author = {Kirill Müller},
  year = {2020},
  note = {R package version 2.0.2},
  url = {https://CRAN.R-project.org/package=rprojroot},
}

@Manual{R-rstan,
  title = {rstan: R Interface to Stan},
  author = {Jiqiang Guo and Jonah Gabry and Ben Goodrich and Sebastian Weber},
  year = {2020},
  note = {R package version 2.21.2},
  url = {https://CRAN.R-project.org/package=rstan},
}

@Manual{R-StanHeaders,
  title = {StanHeaders: C++ Header Files for Stan},
  author = {Ben Goodrich and Andrew Gelman and Bob Carpenter and Matt Hoffman and Daniel Lee and Michael Betancourt and Marcus Brubaker and Jiqiang Guo and Peter Li and Allen Riddell and Marco Inacio and Mitzi Morris and Jeffrey Arnold and Rob Goedman and Brian Lau and Rob Trangucci and Jonah Gabry and Alp Kucukelbir and Robert Grant and Dustin Tran and Michael Malecki and Yuanjun Gao},
  year = {2020},
  note = {R package version 2.21.0-7},
  url = {https://mc-stan.org/},
}

@Manual{R-stantargets,
  title = {stantargets: Targets for Stan Workflows},
  author = {William Michael Landau},
  year = {2021},
  note = {https://docs.ropensci.org/stantargets/},
}

@Manual{R-tarchetypes,
  title = {tarchetypes: Archetypes for Targets},
  author = {William Michael Landau},
  year = {2021},
  note = {https://docs.ropensci.org/tarchetypes/},
}

@Manual{R-targets,
  title = {targets: Dynamic Function-Oriented Make-Like Declarative Workflows},
  author = {William Michael Landau},
  year = {2021},
  note = {R package version 0.8.1},
  url = {https://CRAN.R-project.org/package=targets},
}

@Manual{R-tidybayes,
  title = {tidybayes: Tidy Data and Geoms for Bayesian Models},
  author = {Matthew Kay},
  year = {2021},
  note = {https://mjskay.github.io/tidybayes/},
}

@Article{bayesplot2019,
  title = {Visualization in Bayesian workflow},
  author = {Jonah Gabry and Daniel Simpson and Aki Vehtari and Michael Betancourt and Andrew Gelman},
  year = {2019},
  journal = {J. R. Stat. Soc. A},
  volume = {182},
  issue = {2},
  pages = {389-402},
  doi = {10.1111/rssa.12378},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{boot1997,
  title = {Bootstrap Methods and Their Applications},
  author = {A. C. Davison and D. V. Hinkley},
  publisher = {Cambridge University Press},
  address = {Cambridge},
  year = {1997},
  note = {ISBN 0-521-57391-2},
  url = {http://statwww.epfl.ch/davison/BMA/},
}

@Article{dagitty2016,
  title = {Robust causal inference using directed acyclic graphs: the R package 'dagitty'},
  journal = {International Journal of Epidemiology},
  author = {Johannes Textor and Benito {van der Zander} and Mark S Gilthorpe and Maciej Liśkiewicz and George TH Ellison},
  volume = {45},
  number = {6},
  pages = {1887--1894},
  year = {2016},
  doi = {10.1093/ije/dyw341},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Article{loo2017a,
  title = {Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC},
  author = {Aki Vehtari and Andrew Gelman and Jonah Gabry},
  year = {2017},
  journal = {Statistics and Computing},
  volume = {27},
  issue = {5},
  pages = {1413--1432},
  doi = {10.1007/s11222-016-9696-4},
}

@Article{loo2017b,
  title = {Using stacking to average Bayesian predictive distributions},
  author = {Yuling Yao and Aki Vehtari and Daniel Simpson and Andrew Gelman},
  year = {2017},
  journal = {Bayesian Analysis},
  doi = {10.1214/17-BA1091},
}

@Article{posterior2020,
  title = {Rank-normalization, folding, and localization: An improved Rhat
for assessing convergence of MCMC},
  author = {Aki Vehtari and Andrew Gelman and Daniel Simpson and Bob Carpenter and Paul-Christian Bürkner},
  year = {2020},
  journal = {Bayesian Analysis},
}

@Article{stantargets2021,
  title = {The stantargets {R} package: a workflow framework for efficient reproducible {S}tan-powered {B}ayesian data analysis pipelines},
  author = {William Michael Landau},
  journal = {Journal of Open Source Software},
  year = {2021},
  volume = {6},
  number = {60},
  pages = {3193},
  url = {https://doi.org/10.21105/joss.03193},
}

@Manual{tarchetypes2021,
  title = {tarchetypes: Archetypes for Targets},
  author = {William Michael Landau},
  year = {2021},
  note = {{https://docs.ropensci.org/tarchetypes/, https://github.com/ropensci/tarchetypes}},
}

@Article{targets2021,
  title = {The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing},
  author = {William Michael Landau},
  journal = {Journal of Open Source Software},
  year = {2021},
  volume = {6},
  number = {57},
  pages = {2959},
  url = {https://doi.org/10.21105/joss.02959},
}