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Mapping quality cut-off for RNA-Seq data #8

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hakanozadam opened this issue Apr 14, 2020 · 0 comments
Open

Mapping quality cut-off for RNA-Seq data #8

hakanozadam opened this issue Apr 14, 2020 · 0 comments
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enhancement New feature or request

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@hakanozadam
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There is no way to specify a mapping quality cutoff for RNA-Seq data. However, such a cut-off can be specified for Ribosome Profiling Data.

Adding an argument like follows
rnaseq_mapping_quality_cutoff: 2
and adding "-q" argument in the filtering step will add this feature.
@hakanozadam hakanozadam added the enhancement New feature or request label Apr 14, 2020
@hakanozadam hakanozadam self-assigned this Apr 14, 2020
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