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opt_evalue.html
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opt_evalue.html
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allpairs_global command
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<h1>
-evalue option
</h1>
<span class="ManText">
<br/>
Specifies the maximum E-value for a hit. See
<a href="accept_options.html">
accept options
</a>
,
<a href="DELETE_URL">
weak hits
</a>
,
<a href="karlin_altschul.html">
Karlin-Altschul statistics
</a>
.
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<p>
<span class="ManText">
An expectation value (E-value) is the expected number of local alignments with a given score that would be found in random sequences of the same length as the query and database. This is a convenient way to express how likely it is that a given alignment is due to an evolutionary relationship rather than chance similarity.
</span>
</p>
<p>
<span class="ManText">
For
<span class="c2">
local alignments only
</span>
; E-values cannot be computed for global alignments.
<br/>
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</p>
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