[BUG]: libcugraph-23.10.00-cuda12_231011_gc3dc860d_0 appears to be corrupted

[amole-arup]

Version

Stable 23.10

Which installation method(s) does this occur on?

Conda

Describe the bug.

After the libraries were downloaded using the generated command, I received a CondaVerificationError.

conda create --solver=libmamba -n rapids-23.10 -c rapidsai -c conda-forge -c nvidia  \
    rapids=23.10 python=3.10 cuda-version=12.0 \
    dask-sql jupyterlab dash graphistry xarray-spatial

Minimum reproducible example

No response

Relevant log output

CondaVerificationError: The package for libcugraph located at /root/miniconda3/pkgs/libcugraph-23.10.00-cuda12_231011_gc3dc860d_0
appears to be corrupted. The path 'include/cugraph/algorithms.hpp'
specified in the package manifest cannot be found.

CondaVerificationError: The package for libcugraph located at /root/miniconda3/pkgs/libcugraph-23.10.00-cuda12_231011_gc3dc860d_0
appears to be corrupted. The path 'include/cugraph/api_helpers.hpp'
specified in the package manifest cannot be found.

[...]

CondaVerificationError: The package for libcugraph located at /root/miniconda3/pkgs/libcugraph-23.10.00-cuda12_231011_gc3dc860d_0
appears to be corrupted. The path 'include/cugraph_c/version_config.hpp'
specified in the package manifest cannot be found.

SafetyError: The package for libcugraph located at /root/miniconda3/pkgs/libcugraph-23.10.00-cuda12_231011_gc3dc860d_0
appears to be corrupted. The path 'lib/libcugraph.so'
has an incorrect size.
  reported size: 958052304 bytes
  actual size: 348717056 bytes

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: conda-forge/linux-64::libkml-1.3.0-h01aab08_1018, conda-forge/linux-64::minizip-4.0.3-h0ab5242_0
  path: 'include/minizip/ioapi.h'

[...]

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: rapidsai/linux-64::cuproj-23.10.00-cuda12_py310_231011_g29cddcdc_0, rapidsai/linux-64::libcuspatial-23.10.00-cuda12_231011_g29cddcdc_0
  path: 'lib/cmake/cuproj/cuproj-dependencies.cmake'


ClobberError: This transaction has incompatible packages due to a shared path.
  packages: rapidsai/linux-64::cuproj-23.10.00-cuda12_py310_231011_g29cddcdc_0, rapidsai/linux-64::libcuspatial-23.10.00-cuda12_231011_g29cddcdc_0
  path: 'lib/cmake/cuproj/cuproj-targets.cmake'

Environment details

(base) root@HKGLTCND1460039:~# bash print_env.sh
<details><summary>Click here to see environment details</summary><pre>

     **git***
     Not inside a git repository

     ***OS Information***
     DISTRIB_ID=Ubuntu
     DISTRIB_RELEASE=22.04
     DISTRIB_CODENAME=jammy
     DISTRIB_DESCRIPTION="Ubuntu 22.04.2 LTS"
     PRETTY_NAME="Ubuntu 22.04.2 LTS"
     NAME="Ubuntu"
     VERSION_ID="22.04"
     VERSION="22.04.2 LTS (Jammy Jellyfish)"
     VERSION_CODENAME=jammy
     ID=ubuntu
     ID_LIKE=debian
     HOME_URL="https://www.ubuntu.com/"
     SUPPORT_URL="https://help.ubuntu.com/"
     BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
     PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
     UBUNTU_CODENAME=jammy
     Linux HKGLTCND1460039 5.15.90.1-microsoft-standard-WSL2 #1 SMP Fri Jan 27 02:56:13 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

     ***GPU Information***
     Thu Nov 16 18:28:16 2023
     +---------------------------------------------------------------------------------------+
     | NVIDIA-SMI 535.129.01             Driver Version: 537.70       CUDA Version: 12.2     |
     |-----------------------------------------+----------------------+----------------------+
     | GPU  Name                 Persistence-M | Bus-Id        Disp.A | Volatile Uncorr. ECC |
     | Fan  Temp   Perf          Pwr:Usage/Cap |         Memory-Usage | GPU-Util  Compute M. |
     |                                         |                      |               MIG M. |
     |=========================================+======================+======================|
     |   0  NVIDIA RTX A3000 Laptop GPU    On  | 00000000:01:00.0  On |                  N/A |
     | N/A   61C    P0              29W /  80W |   2283MiB /  6144MiB |      0%      Default |
     |                                         |                      |                  N/A |
     +-----------------------------------------+----------------------+----------------------+

     +---------------------------------------------------------------------------------------+
     | Processes:                                                                            |
     |  GPU   GI   CI        PID   Type   Process name                            GPU Memory |
     |        ID   ID                                                             Usage      |
     |=======================================================================================|
     |    0   N/A  N/A        72      G   /Xwayland                                 N/A      |
     +---------------------------------------------------------------------------------------+

     ***CPU***
     Architecture:                    x86_64
     CPU op-mode(s):                  32-bit, 64-bit
     Address sizes:                   39 bits physical, 48 bits virtual
     Byte Order:                      Little Endian
     CPU(s):                          16
     On-line CPU(s) list:             0-15
     Vendor ID:                       GenuineIntel
     Model name:                      11th Gen Intel(R) Core(TM) i9-11950H @ 2.60GHz
     CPU family:                      6
     Model:                           141
     Thread(s) per core:              2
     Core(s) per socket:              8
     Socket(s):                       1
     Stepping:                        1
     BogoMIPS:                        5222.40
     Flags:                           fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon rep_good nopl xtopology tsc_reliable nonstop_tsc cpuid pni pclmulqdq vmx ssse3 fma cx16 pdcm pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single ssbd ibrs ibpb stibp ibrs_enhanced tpr_shadow vnmi ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid avx512f avx512dq rdseed adx smap avx512ifma clflushopt clwb avx512cd sha_ni avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves avx512vbmi umip avx512_vbmi2 gfni vaes vpclmulqdq avx512_vnni avx512_bitalg avx512_vpopcntdq rdpid movdiri movdir64b fsrm avx512_vp2intersect flush_l1d arch_capabilities
     Virtualization:                  VT-x
     Hypervisor vendor:               Microsoft
     Virtualization type:             full
     L1d cache:                       384 KiB (8 instances)
     L1i cache:                       256 KiB (8 instances)
     L2 cache:                        10 MiB (8 instances)
     L3 cache:                        24 MiB (1 instance)
     Vulnerability Itlb multihit:     Not affected
     Vulnerability L1tf:              Not affected
     Vulnerability Mds:               Not affected
     Vulnerability Meltdown:          Not affected
     Vulnerability Mmio stale data:   Not affected
     Vulnerability Retbleed:          Mitigation; Enhanced IBRS
     Vulnerability Spec store bypass: Mitigation; Speculative Store Bypass disabled via prctl and seccomp
     Vulnerability Spectre v1:        Mitigation; usercopy/swapgs barriers and __user pointer sanitization
     Vulnerability Spectre v2:        Mitigation; Enhanced IBRS, IBPB conditional, RSB filling, PBRSB-eIBRS SW sequence
     Vulnerability Srbds:             Not affected
     Vulnerability Tsx async abort:   Not affected

     ***CMake***

     ***g++***

     ***nvcc***

     ***Python***
     /root/miniconda3/bin/python
     Python 3.11.5

     ***Environment Variables***
     PATH                            : /root/miniconda3/bin:/root/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/lib/wsl/lib:/mnt/c/Program
     Files                           : (x86)/Common
     Files/Oracle/Java/javapath:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0:/mnt/c/WINDOWS/System32/OpenSSH:/mnt/c/Program: Files/WindowsPowerShell/Scripts/HP.ClientScriptLibrary:/mnt/c/Program
     Files                           : (x86)/Enterprise
     Vault/EVClient/x64:/mnt/c/Program: Files/Microsoft
     SQL                             : Server/120/Tools/Binn:/mnt/c/Program
     Files/Common                    : Files/Autodesk
     Shared:/mnt/c/Program           : Files
     (x86)/Windows                   : Live/Shared:/mnt/c/Program
     Files/dotnet:/mnt/c/Program     : Files/gs/gs9.56.1/bin:/mnt/c/Users/andrew.mole/.micromamba/Library/bin:/mnt/c/Program
     Files/1E/Client/Extensibility/NomadBranch:/mnt/c/Users/andrew.mole/AppData/Local/micromamba:/mnt/c/Tcl/bin:/mnt/c/Users/andrew.mole/AppData/Local/Microsoft/WindowsApps:/mnt/c/Users/andrew.mole/AppData/Local/Programs/Microsoft: VS
     Code/bin:/mnt/c/Users/andrew.mole/AppData/Local/Programs/Git/cmd:/mnt/c/Users/andrew.mole/AppData/Local/GnuPG/bin:/mnt/c/Users/andrew.mole/AppData/Local/GitHubDesktop/bin:/mnt/c/Users/andrew.mole/AppData/Local/Programs/MiKTeX/miktex/bin/x64:/mnt/c/Users/andrew.mole/.dotnet/tools:/mnt/c/ProgramData/Anaconda3/envs/rustenv/Library/bin:/mnt/c/Users/andrew.mole/AppData/Local/Microsoft/WindowsApps:/snap/bin:
     LD_LIBRARY_PATH                 :
     NUMBAPRO_NVVM                   :
     NUMBAPRO_LIBDEVICE              :
     CONDA_PREFIX                    : /root/miniconda3
     PYTHON_PATH                     :

     ***conda packages***
     /root/miniconda3/bin/conda
     # packages in environment at /root/miniconda3:
     #
     # Name                    Version                   Build  Channel
     _libgcc_mutex             0.1                        main
     _openmp_mutex             5.1                       1_gnu
     boltons                   23.0.0          py311h06a4308_0
     brotlipy                  0.7.0           py311h5eee18b_1002
     bzip2                     1.0.8                h7b6447c_0
     c-ares                    1.19.1               h5eee18b_0
     ca-certificates           2023.08.22           h06a4308_0
     certifi                   2023.7.22       py311h06a4308_0
     cffi                      1.15.1          py311h5eee18b_3
     charset-normalizer        2.0.4              pyhd3eb1b0_0
     conda                     23.9.0          py311h06a4308_0
     conda-content-trust       0.2.0           py311h06a4308_0
     conda-libmamba-solver     23.9.1          py311h06a4308_0
     conda-package-handling    2.2.0           py311h06a4308_0
     conda-package-streaming   0.9.0           py311h06a4308_0
     cryptography              41.0.3          py311hdda0065_0
     fmt                       9.1.0                hdb19cb5_0
     icu                       73.1                 h6a678d5_0
     idna                      3.4             py311h06a4308_0
     jsonpatch                 1.32               pyhd3eb1b0_0
     jsonpointer               2.1                pyhd3eb1b0_0
     krb5                      1.20.1               h143b758_1
     ld_impl_linux-64          2.38                 h1181459_1
     libarchive                3.6.2                h6ac8c49_2
     libcurl                   8.2.1                h251f7ec_0
     libedit                   3.1.20221030         h5eee18b_0
     libev                     4.33                 h7f8727e_1
     libffi                    3.4.4                h6a678d5_0
     libgcc-ng                 11.2.0               h1234567_1
     libgomp                   11.2.0               h1234567_1
     libmamba                  1.5.1                haf1ee3a_0
     libmambapy                1.5.1           py311h2dafd23_0
     libnghttp2                1.52.0               h2d74bed_1
     libsolv                   0.7.24               he621ea3_0
     libssh2                   1.10.0               hdbd6064_2
     libstdcxx-ng              11.2.0               h1234567_1
     libuuid                   1.41.5               h5eee18b_0
     libxml2                   2.10.4               hf1b16e4_1
     lz4-c                     1.9.4                h6a678d5_0
     ncurses                   6.4                  h6a678d5_0
     openssl                   3.0.11               h7f8727e_2
     packaging                 23.1            py311h06a4308_0
     pcre2                     10.42                hebb0a14_0
     pip                       23.2.1          py311h06a4308_0
     pluggy                    1.0.0           py311h06a4308_1
     pybind11-abi              4                    hd3eb1b0_1
     pycosat                   0.6.6           py311h5eee18b_0
     pycparser                 2.21               pyhd3eb1b0_0
     pyopenssl                 23.2.0          py311h06a4308_0
     pysocks                   1.7.1           py311h06a4308_0
     python                    3.11.5               h955ad1f_0
     readline                  8.2                  h5eee18b_0
     reproc                    14.2.4               h295c915_1
     reproc-cpp                14.2.4               h295c915_1
     requests                  2.31.0          py311h06a4308_0
     ruamel.yaml               0.17.21         py311h5eee18b_0
     setuptools                68.0.0          py311h06a4308_0
     sqlite                    3.41.2               h5eee18b_0
     tk                        8.6.12               h1ccaba5_0
     tqdm                      4.65.0          py311h92b7b1e_0
     truststore                0.8.0           py311h06a4308_0
     tzdata                    2023c                h04d1e81_0
     urllib3                   1.26.16         py311h06a4308_0
     wheel                     0.41.2          py311h06a4308_0
     xz                        5.4.2                h5eee18b_0
     yaml-cpp                  0.7.0                h295c915_1
     zlib                      1.2.13               h5eee18b_0
     zstandard                 0.19.0          py311h5eee18b_0
     zstd                      1.5.5                hc292b87_0

Other/Misc.

No response

Code of Conduct

• I agree to follow cuGraph's Code of Conduct
• I have searched the open bugs and have found no duplicates for this bug report

[rlratzel]

Hi @amole-arup , sorry for the delay in responding.
I just ran the command you used above without any problem, so I'm assuming what you experienced was possibly a temporary download error? Here's what I see:

root@e35c74a6fda3:~# conda create --solver=libmamba -n rapids-23.10 -c rapidsai -c conda-forge -c nvidia rapids=23.10 python=3.10 cuda-version=12.0 dask-sql jupyterlab dash graphistry xarray-spatial
Channels:
 - rapidsai
 - conda-forge
 - nvidia
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment:

...

#
# To activate this environment, use
#
#     $ conda activate rapids-23.10
#
# To deactivate an active environment, use
#
#     $ conda deactivate

root@e35c74a6fda3:~# conda activate rapids-23.10
(rapids-23.10) root@e35c74a6fda3:~#
(rapids-23.10) root@e35c74a6fda3:~#
(rapids-23.10) root@e35c74a6fda3:~# conda list cugraph
# packages in environment at /opt/conda/envs/rapids-23.10:
#
# Name                    Version                   Build  Channel
cugraph                   23.10.00        cuda12_py310_231011_gc3dc860d_0    rapidsai
libcugraph                23.10.00        cuda12_231011_gc3dc860d_0    rapidsai
libcugraph_etl            23.10.00        cuda12_231011_gc3dc860d_0    rapidsai
libcugraphops             23.10.00        cuda12_231011_gca4b54ac_0    nvidia
pylibcugraph              23.10.00        cuda12_py310_231011_gc3dc860d_0    rapidsai
(rapids-23.10) root@e35c74a6fda3:~# python
Python 3.10.13 | packaged by conda-forge | (main, Oct 26 2023, 18:07:37) [GCC 12.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import cugraph
>>> cugraph.__version__
'23.10.00'
>>>

Can you try again and let us know if you're still seeing the same problem?

[rlratzel]

I'll close this since I could not reproduce the problem (see comment above). Please re-open it or create a new issue if there's still a problem.