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python /media/drive12TB1/projects/software/mixer/mixer/precimed/mixer_figures.py
one
--json results_mixer/EUR_ancestry_subjects_results_maf_0.01_univariate_mixer_qc_noMHC.fit.json
--out images/EUR_ancestry_subjects_results_maf_0.01_univariate_mixer_qc_noMHC.fit
--statistic mean std
The power plot is blank and throws a warning.
The *power.csv file has results that look valid.
This error has something to do with
matplotlib
precimed/mixer/figures.py:339: UserWarning: FixedFormatter should only be used together with FixedLocator
plt.gca().set_xticklabels(labels=['10K', '100K', '1M', '10M', '100M'])
precimed/mixer/figures.py:342: UserWarning: FixedFormatter should only be used together with FixedLocator
plt.axes().set_yticklabels(labels=['0', '20', '40', '60', '80', '100'])
I added some code to set the tick positions but they just overlay and leave the old positions in there.
The text was updated successfully, but these errors were encountered:
Hi there,
I encountered the same issue today. The plotting script throws the same warning and returns a blank plot, although the trait1_trait2_trait3.fit.power.csv data looks perfectly fine.
Hope someone has a solution to the issue!
python /media/drive12TB1/projects/software/mixer/mixer/precimed/mixer_figures.py
one
--json results_mixer/EUR_ancestry_subjects_results_maf_0.01_univariate_mixer_qc_noMHC.fit.json
--out images/EUR_ancestry_subjects_results_maf_0.01_univariate_mixer_qc_noMHC.fit
--statistic mean std
The power plot is blank and throws a warning.
The *power.csv file has results that look valid.
This error has something to do with
matplotlib
precimed/mixer/figures.py:339: UserWarning: FixedFormatter should only be used together with FixedLocator
plt.gca().set_xticklabels(labels=['10K', '100K', '1M', '10M', '100M'])
precimed/mixer/figures.py:342: UserWarning: FixedFormatter should only be used together with FixedLocator
plt.axes().set_yticklabels(labels=['0', '20', '40', '60', '80', '100'])
I added some code to set the tick positions but they just overlay and leave the old positions in there.
![EUR_ancestry_subjects_results_maf_0 01_univariate_mixer_qc_noMHC fit power](https://private-user-images.githubusercontent.com/54116217/311312294-a88f9385-b4eb-42e4-9017-6acd6ea5390b.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.GjH7OrcKw26x7YJtJBf93n_ByDBhC9fcF6E8YhE1-QU)
The text was updated successfully, but these errors were encountered: