Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Questions on updating to version 1.3.0 #67

Open
yyy-nkl opened this issue Feb 11, 2023 · 2 comments
Open

Questions on updating to version 1.3.0 #67

yyy-nkl opened this issue Feb 11, 2023 · 2 comments

Comments

@yyy-nkl
Copy link

yyy-nkl commented Feb 11, 2023

I git the singularity container of mixer (https://github.com/comorment/mixer). I have installed mixer through singularity (figure shows), but when I run mix.py, the log file noted the version was still 1.2.0. Why didn't I got the update? What should I do to update to version 1.3.0?
image

singularity shell /mixer/src/mixer.sif
python /tools/mixer/precimed/mixer.py fit1 \
--trait1-file $EPI/GrimAge_qc_noMHC.csv.gz \
--out $EPIOUT/GrimAge_qc_noMHC.fit.rep${SLURM_ARRAY_TASK_ID} \
--extract /REF/ldsc/1000G_EUR_Phase3_plink/1000G.EUR.QC.prune_maf0p05_rand2M_r2p8.rep${SLURM_ARRAY_TASK_ID}.snps \
--bim-file /REF/ldsc/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.bim \
--ld-file /REF/ldsc/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.run4.ld

Thank you in advance for help!

@yyy-nkl yyy-nkl changed the title Questions on upate to version 1.3.0 Questions on updating to version 1.3.0 Feb 11, 2023
@pinliang168
Copy link

Would you tell me have you solved this problem and how did you solve?I‘m meeting the same problem

@EleniFri
Copy link

Any updates on this? I have the same issue...

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants