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use of openBioDiv ontology where possible #40

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myrmoteras opened this issue Mar 2, 2024 · 2 comments
Open

use of openBioDiv ontology where possible #40

myrmoteras opened this issue Mar 2, 2024 · 2 comments
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@myrmoteras
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https://openbiodiv.net/ontologies

how can we use this ontologies, eg for terms like taxonomicConcept, treatmentCitation, etc?

see also

Hi Lyubo and Teodor
Where is the openbiodiv ontology? We whould like to use it but we can de-reference the terms, eg https://openbiodiv.net/ScientificName

Or taxonomicConcept.

Thanks for a hint

Donat

@myrmoteras
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myrmoteras commented Mar 2, 2024

here seems to be hint, and this is not where the url https://openbiodiv.net/ScientificName should leed to

https://graph.openbiodiv.net/resource?uri=https:%2F%2Fopenbiodiv.net%2FScientificName

or taxonomicConcept https://graph.openbiodiv.net/resource?uri=https:%2F%2Fopenbiodiv.net%2FTaxonomicConcept

the referenced source o taxonomic concpet: Berendson 1995

subject predicate object context
1 openbiodiv:TaxonomicConcept rdf:type owl:Class http://www.ontotext.com/explicit
2 openbiodiv:TaxonomicConcept rdfs:comment "A taxonomic concept in the sense of Berendsohn"@en http://www.ontotext.com/explicit
3 openbiodiv:TaxonomicConcept rdfs:subClassOf _:node38 http://www.ontotext.com/explicit
4 openbiodiv:TaxonomicConcept rdfs:subClassOf fabio:Work http://www.ontotext.com/implicit
5 openbiodiv:TaxonomicConcept rdfs:subClassOf dwc:Taxon http://www.ontotext.com/implicit
6 openbiodiv:TaxonomicConcept rdfs:subClassOf skos:Concept http://www.ontotext.com/implicit
7 openbiodiv:TaxonomicConcept rdfs:subClassOf openbiodiv:OperationalTaxonomicUnit http://www.ontotext.com/explicit
8 openbiodiv:TaxonomicConcept rdfs:subClassOf openbiodiv:TaxonomicConcept http://www.ontotext.com/implicit
9 openbiodiv:TaxonomicConcept owl:equivalentClass dwc:Taxon http://www.ontotext.com/explicit
10 openbiodiv:TaxonomicConcept owl:equivalentClass openbiodiv:TaxonomicConcept http://www.ontotext.com/implicit

@myrmoteras
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myrmoteras commented Mar 2, 2024

https://graph.openbiodiv.net/sparql

PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
select * where { 
	?s rdf:type <http://www.w3.org/2002/07/owl#Class> .
} 

query-result.csv

s

1 openbiodiv:Institution
2 openbiodiv:Publisher
3 openbiodiv:Checklist
4 openbiodiv:TaxonomicKey
5 openbiodiv:Treatment
6 openbiodiv:NomenclatureSection
7 openbiodiv:NomenclatureCitationsList
8 openbiodiv:NomenclatureCitation
9 openbiodiv:LitCitation
10 openbiodiv:MaterialsExamined
11 openbiodiv:EcologySection
12 openbiodiv:ConservationStatus
13 openbiodiv:MorphologySection
14 openbiodiv:DiagnosisSection
15 openbiodiv:TypeLocality
16 openbiodiv:TaxonomicNameUsage
17 openbiodiv:EtymologySection
18 openbiodiv:Uses
19 openbiodiv:MolecularData
20 openbiodiv:HolotypeDescription
21 openbiodiv:TaxonomySection
22 openbiodiv:BOLDBin
23 openbiodiv:BOLDRecord
24 openbiodiv:GenBankAccession
25 openbiodiv:ScientificName
26 datacite:ResourceIdentifier
27 openbiodiv:TaxonomicConcept
28 openbiodiv:TaxonomicConceptLabel
29 openbiodiv:AuthorOfReferencedMaterial
30 po:Structured
31 po:Pattern
32 openbiodiv:Mention
33 ptop:Statement
34 foaf:Agent
35 openbiodiv:TaxonomicArticle
36 openbiodiv:NomenclatureHeading
37 openbiodiv:BiologySection
38 openbiodiv:DescriptionSection
39 openbiodiv:DistributionSection
40 openbiodiv:TaxonomicChecklist
41 openbiodiv:TaxonomicName
42 openbiodiv:LatinName
43 openbiodiv:OTU_Id
44 openbiodiv:VernacularName
45 dwc:Taxon
46 openbiodiv:OperationalTaxonomicUnit
47 openbiodiv:RCC5Dictionary
48 openbiodiv:RCC5Relation
49 openbiodiv:RCC5Statement
50 openbiodiv:TaxonomicStatusDictionary
51 openbiodiv:TaxonomicStatus
52 datacite:PersonalIdentifier
53 datacite:ResourceIdentifierScheme
54 datacite:PersonalIdentifierScheme
55 openbiodiv:TaxonomicDiscovery

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