clean_data.ipynb

{
  "nbformat": 4,
  "nbformat_minor": 0,
  "metadata": {
    "colab": {
      "name": "GitHub - Segmentation: Cleaning Data.ipynb",
      "provenance": [],
      "collapsed_sections": []
    },
    "kernelspec": {
      "display_name": "Python 3",
      "name": "python3"
    }
  },
  "cells": [
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "gbKSoV3t_LBm"
      },
      "source": [
        "## Resources:"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "G1H_EsAl-50t"
      },
      "source": [
        "- [Documentation for MLHub API and dataset](https://radiant-mlhub.s3-us-west-2.amazonaws.com/landcovernet/Documentation.pdf): Here is all the information about labels, dataset structure, etc.\n",
        "- [Tutorial with notebooks for MLHub](https://github.com/radiantearth/mlhub-tutorials/blob/master/notebooks/radiant-mlhub-landcovernet.ipynb)"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "N7BKShsc8sHG"
      },
      "source": [
        "%%capture\n",
        "!pip -q install rasterio\n",
        "!pip install fastai --upgrade"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "AfFj6h828w-I"
      },
      "source": [
        "import rasterio as rio\n",
        "from rasterio.plot import show\n",
        "from matplotlib import pyplot as plt\n",
        "import numpy\n",
        "from fastai.vision.all import *\n",
        "import matplotlib.patches as mpatches"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "VeKkOtB48yQO",
        "outputId": "f3b6f44d-82a6-4a24-dc27-4fe57924ea6d"
      },
      "source": [
        "from google.colab import drive\n",
        "drive.mount('/content/drive')"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Mounted at /content/drive\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "4l2mWTbyWDmm"
      },
      "source": [
        "# Export labels in color to filter out manually"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "collapsed": true,
        "id": "OsZEReCk8fLO",
        "outputId": "ee106135-4e07-42b3-dd14-dd626b032f4b"
      },
      "source": [
        "!unzip 'landcovernet_RGB.zip'"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "\u001b[1;30;43mStreaming output truncated to the last 5000 lines.\u001b[0m\n",
            "  inflating: landcovernet/35NLA_25/35NLA_25_20180104_B02_10m.tif  \n",
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            "   creating: landcovernet/35LNF_08/\n",
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            "   creating: landcovernet/31PGS_25/\n",
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            "   creating: landcovernet/35JKL_08/\n",
            "  inflating: landcovernet/35JKL_08/35JKL_08_20180103_B08_10m.tif  \n",
            "  inflating: landcovernet/35JKL_08/35JKL_08_20180103_B02_10m.tif  \n",
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            "   creating: landcovernet/34MBC_07/\n",
            "  inflating: landcovernet/34MBC_07/34MBC_07_20180105_B08_10m.tif  \n",
            "  inflating: landcovernet/34MBC_07/34MBC_07_2018_LC_10m.tif  \n",
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            "  inflating: landcovernet/34MBC_07/34MBC_07_20180105_B04_10m.tif  \n",
            "   creating: landcovernet/35JKL_17/\n",
            "  inflating: landcovernet/35JKL_17/35JKL_17_20180103_B08_10m.tif  \n",
            "  inflating: landcovernet/35JKL_17/35JKL_17_20180103_B04_10m.tif  \n",
            "  inflating: landcovernet/35JKL_17/35JKL_17_20180103_B02_10m.tif  \n",
            "  inflating: landcovernet/35JKL_17/35JKL_17_20180103_B03_10m.tif  \n",
            "  inflating: landcovernet/35JKL_17/35JKL_17_2018_LC_10m.tif  \n",
            "   creating: landcovernet/35KKP_22/\n",
            "  inflating: landcovernet/35KKP_22/35KKP_22_20180103_B03_10m.tif  \n",
            "  inflating: landcovernet/35KKP_22/35KKP_22_20180103_B08_10m.tif  \n",
            "  inflating: landcovernet/35KKP_22/35KKP_22_20180103_B02_10m.tif  \n",
            "  inflating: landcovernet/35KKP_22/35KKP_22_20180103_B04_10m.tif  \n",
            "  inflating: landcovernet/35KKP_22/35KKP_22_2018_LC_10m.tif  \n",
            "   creating: landcovernet/35NLA_05/\n",
            "  inflating: landcovernet/35NLA_05/35NLA_05_2018_LC_10m.tif  \n",
            "  inflating: landcovernet/35NLA_05/35NLA_05_20180104_B02_10m.tif  \n",
            "  inflating: landcovernet/35NLA_05/35NLA_05_20180104_B04_10m.tif  \n",
            "  inflating: landcovernet/35NLA_05/35NLA_05_20180104_B03_10m.tif  \n",
            "  inflating: landcovernet/35NLA_05/35NLA_05_20180104_B08_10m.tif  \n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "CEcChwpGcmOx"
      },
      "source": [
        "def get_rgb(path_dict) :\n",
        "  red = rio.open(path_dict['red']).read(1) # B4\n",
        "  green = rio.open(path_dict['green']).read(1) # B3\n",
        "  blue = rio.open(path_dict['blue']).read(1) # B2\n",
        "\n",
        "  rgb = np.dstack((red, green, blue))\n",
        "\n",
        "  # normalize and convert to range 0-255\n",
        "  rgb = ((rgb - rgb.min()) / (rgb.max() - rgb.min()) * 255).astype(int)\n",
        "  return rgb"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "xX0kQtY3dc1E"
      },
      "source": [
        "def get_labels(path):\n",
        "  labels = rio.open(path).read(1) # LC_10m.tif file\n",
        "  return labels"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 269
        },
        "id": "4F5QYFrw8RvP",
        "outputId": "8c0664fa-b759-483d-b93c-fe34de47871e"
      },
      "source": [
        "labels = {0:'Unknown', 1:'Water', 2:'Artificial soil', 3:'Natural soil', 4:'Snow/Ice', 5:'Woody vegetation', 6:'Cultivated vegetation', 7:'Natural vegetation'}\r\n",
        "colors = {0:'k', 1:'b', 2:'gray', 3:'maroon', 4:'whitesmoke', 5:'forestgreen', 6:'orange', 7:'springgreen'}\r\n",
        "patches = [ mpatches.Patch(color=colors[i], label=f'{labels[i]}') for i in range(len(labels)) ]\r\n",
        "\r\n",
        "Path('labels').mkdir(parents=True, exist_ok=True)\r\n",
        "\r\n",
        "for loc in Path('landcovernet').ls() :\r\n",
        "  for img in loc.ls() :\r\n",
        "    if re.search('.*_LC_10m.tif', str(img)) : path = img\r\n",
        "  filename = str(path).split('/')[-1].split('.')[0]\r\n",
        "  #print(filename)\r\n",
        "  im = np.array([[matplotlib.colors.to_rgb(colors[i]) for i in j] for j in get_labels(path)])\r\n",
        "  plt.imsave('labels/' + filename + '.png', im)"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "display_data",
          "data": {
            "image/png": 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\n",
            "text/plain": [
              "<Figure size 432x288 with 1 Axes>"
            ]
          },
          "metadata": {
            "tags": [],
            "needs_background": "light"
          }
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "Bt-V0bt_APsl"
      },
      "source": [
        "%%capture\r\n",
        "!zip -r labels.zip labels"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "MHiPmOD7Haeg"
      },
      "source": [
        "Now, I manually deleted labels where the annotation was badly performed. With 1980 labels, it took me around 30 minutes. Unfortunately, I had to discard over 50% of the labels. I saved the filtered labels as labels.zip again."
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "XiIL8NfHUZsE"
      },
      "source": [
        "# Load filtered labels and delete images that have no labels"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "kL0Y2zNkIBrL"
      },
      "source": [
        "First of all, I uploaded the archive with filtered labels into Colab."
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "collapsed": true,
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "W9mizqyZUjoO",
        "outputId": "7df956e2-ad59-4972-be5c-94e747ee4a2c"
      },
      "source": [
        "!unzip labels.zip"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Archive:  labels.zip\n",
            "   creating: labels/\n",
            "   creating: labels/labels_full/\n",
            "   creating: labels/labels_full/.ipynb_checkpoints/\n",
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          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "YpbA1oPqUj39",
        "outputId": "3de85f22-b4d5-4c5a-9e3d-4660d641246b"
      },
      "source": [
        "paths = Path('labels').ls()\r\n",
        "locs = [re.findall(r'(.*)_2018_LC_10m.png', str(path).split('/')[-1]) for path in paths]\r\n",
        "locs = list(itertools.chain(*locs))\r\n",
        "len(locs)"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "execute_result",
          "data": {
            "text/plain": [
              "920"
            ]
          },
          "metadata": {
            "tags": []
          },
          "execution_count": 56
        }
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "Uydh84DrXKj9"
      },
      "source": [
        "Remove RGB images that have **no label** because we deleted it due to bad quality"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "jFT0LktZUkAk"
      },
      "source": [
        "for img in Path('landcovernet_RGB/inputs').ls() :\r\n",
        "  imname = re.findall(r'(.*_[0-9]+)_2018[0-9]+_RGB.png', str(img).split('/')[-1])[0]\r\n",
        "  if not imname in locs : \r\n",
        "    os.remove(img)"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "6IBv0XeFaRiF"
      },
      "source": [
        "%%capture\r\n",
        "!zip -r landcovernet_RGB_hq_labels.zip landcovernet_RGB"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "_GBJ3ZYCKIuB"
      },
      "source": [
        "# Remove cloudy images that bypassed the first assessment"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "wT4ELJ-TJDG1"
      },
      "source": [
        "Next step: Even though theoretically, we should have clean data by now, there are still images with clouds present in the training data. This is because the \"non-cloudy\" images were simply *estimated* as such, but it cannot be guaranteed. To remove cloudy images, I have to go through them manually and simply delete from the dataset."
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "XkZMoVfEJ6md"
      },
      "source": [
        "Finally, I saved the completely prepared and clean data as `landcovernet_final.zip`\r\n",
        "\r\n",
        "This is the archive that we will use in the training."
      ]
    }
  ]
}