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externalise update_json_with_dicom_value (l151+ from dcm2niix4pet.py) as a function update_jsonpet_with_dicom_value.py ?? adding pet to the name make it clear it is not just a maj it is pet specific (up to you which name to use)
check line 84 in https://github.com/openneuropet/PET2BIDS/edit/JOSS_paper/paper.md , needs to reference the python function
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