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.pre-commit-config.yaml
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.pre-commit-config.yaml
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exclude: '\.(tsv|fasta|gb)$|^ingest/vendored/'
repos:
- repo: https://github.com/snakemake/snakefmt
rev: v0.10.2
hooks:
- id: snakefmt
language_version: python3.11
- repo: https://github.com/rhysd/actionlint
rev: v1.7.1
hooks:
- id: actionlint
entry: env SHELLCHECK_OPTS='--exclude=SC2027' actionlint
- repo: https://github.com/codespell-project/codespell
rev: v2.3.0
hooks:
- id: codespell
additional_dependencies:
- tomli
- repo: https://github.com/google/yamlfmt
rev: v0.13.0
hooks:
- id: yamlfmt
- repo: https://github.com/pappasam/toml-sort
rev: v0.23.1
hooks:
- id: toml-sort-fix
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.6.0
hooks:
- id: trailing-whitespace
- id: check-ast
- id: check-case-conflict
- id: check-docstring-first
- id: check-json
- id: check-executables-have-shebangs
- id: check-merge-conflict
- id: check-shebang-scripts-are-executable
- id: check-symlinks
- id: check-toml
- id: check-yaml
- id: destroyed-symlinks
- id: detect-private-key
- id: end-of-file-fixer
- id: fix-byte-order-marker
- repo: https://github.com/pre-commit/sync-pre-commit-deps
rev: v0.0.1
hooks:
- id: sync-pre-commit-deps
- repo: https://github.com/shellcheck-py/shellcheck-py
rev: v0.10.0.1
hooks:
- id: shellcheck