Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Bugfix: a couple of mask_depth related issues #1457

Merged
merged 5 commits into from
Aug 5, 2021
Merged

Bugfix: a couple of mask_depth related issues #1457

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
34b18df
Correct topography for masked-out land PEs halos
herrwang0 Jul 31, 2021
1ce6fe1
Rename local variable Dmin in initialize_masks()
herrwang0 Jul 31, 2021
1acc70e
Fix mask bug in apply_topography_edits_from_file
herrwang0 Jul 31, 2021
20d91da
Merge branch 'dev/gfdl' into fix-topoinit_2
marshallward Aug 5, 2021
a77817d
Merge branch 'dev/gfdl' into fix-topoinit_2
marshallward Aug 5, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
18 changes: 9 additions & 9 deletions src/initialization/MOM_grid_initialize.F90
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1187,7 +1187,7 @@ end function Adcroft_reciprocal
!> Initializes the grid masks and any metrics that come with masks already applied.
!!
!! Initialize_masks sets mask2dT, mask2dCu, mask2dCv, and mask2dBu to mask out
!! flow over any points which are shallower than Dmin and permit an
!! flow over any points which are shallower than Dmask and permit an
!! appropriate treatment of the boundary conditions. mask2dCu and mask2dCv
!! are 0.0 at any points adjacent to a land point. mask2dBu is 0.0 at
!! any land or boundary point. For points in the interior, mask2dCu,
Expand All @@ -1199,7 +1199,7 @@ subroutine initialize_masks(G, PF, US)
! Local variables
real :: m_to_Z_scale ! A unit conversion factor from m to Z.
real :: m_to_L ! A unit conversion factor [L m-1 ~> nondim]
real :: Dmin ! The depth for masking in the same units as G%bathyT [Z ~> m].
real :: Dmask ! The depth for masking in the same units as G%bathyT [Z ~> m].
real :: min_depth ! The minimum ocean depth in the same units as G%bathyT [Z ~> m].
real :: mask_depth ! The depth shallower than which to mask a point as land [Z ~> m].
character(len=40) :: mdl = "MOM_grid_init initialize_masks"
Expand All @@ -1226,39 +1226,39 @@ subroutine initialize_masks(G, PF, US)
'MASKING_DEPTH is larger than MINIMUM_DEPTH and therefore ignored.')
endif

Dmin = min_depth
if (mask_depth /= -9999.*m_to_Z_scale) Dmin = mask_depth
Dmask = mask_depth
if (mask_depth == -9999.*m_to_Z_scale) Dmask = min_depth

G%mask2dCu(:,:) = 0.0 ; G%mask2dCv(:,:) = 0.0 ; G%mask2dBu(:,:) = 0.0

! Construct the h-point or T-point mask
do j=G%jsd,G%jed ; do i=G%isd,G%ied
if (G%bathyT(i,j) <= Dmin) then
if (G%bathyT(i,j) <= Dmask) then
G%mask2dT(i,j) = 0.0
else
G%mask2dT(i,j) = 1.0
endif
enddo ; enddo

do j=G%jsd,G%jed ; do I=G%isd,G%ied-1
if ((G%bathyT(i,j) <= Dmin) .or. (G%bathyT(i+1,j) <= Dmin)) then
if ((G%bathyT(i,j) <= Dmask) .or. (G%bathyT(i+1,j) <= Dmask)) then
G%mask2dCu(I,j) = 0.0
else
G%mask2dCu(I,j) = 1.0
endif
enddo ; enddo

do J=G%jsd,G%jed-1 ; do i=G%isd,G%ied
if ((G%bathyT(i,j) <= Dmin) .or. (G%bathyT(i,j+1) <= Dmin)) then
if ((G%bathyT(i,j) <= Dmask) .or. (G%bathyT(i,j+1) <= Dmask)) then
G%mask2dCv(i,J) = 0.0
else
G%mask2dCv(i,J) = 1.0
endif
enddo ; enddo

do J=G%jsd,G%jed-1 ; do I=G%isd,G%ied-1
if ((G%bathyT(i+1,j) <= Dmin) .or. (G%bathyT(i+1,j+1) <= Dmin) .or. &
(G%bathyT(i,j) <= Dmin) .or. (G%bathyT(i,j+1) <= Dmin)) then
if ((G%bathyT(i+1,j) <= Dmask) .or. (G%bathyT(i+1,j+1) <= Dmask) .or. &
(G%bathyT(i,j) <= Dmask) .or. (G%bathyT(i,j+1) <= Dmask)) then
G%mask2dBu(I,J) = 0.0
else
G%mask2dBu(I,J) = 1.0
Expand Down
19 changes: 17 additions & 2 deletions src/initialization/MOM_shared_initialization.F90
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -195,8 +195,8 @@ subroutine apply_topography_edits_from_file(D, G, param_file, US)
character(len=200) :: topo_edits_file, inputdir ! Strings for file/path
character(len=40) :: mdl = "apply_topography_edits_from_file" ! This subroutine's name.
integer :: i, j, n, ncid, n_edits, i_file, j_file, ndims, sizes(8)
logical :: found
logical :: topo_edits_change_mask
real :: min_depth, mask_depth

call callTree_enter(trim(mdl)//"(), MOM_shared_initialization.F90")

Expand All @@ -210,6 +210,17 @@ subroutine apply_topography_edits_from_file(D, G, param_file, US)
call get_param(param_file, mdl, "ALLOW_LANDMASK_CHANGES", topo_edits_change_mask, &
"If true, allow topography overrides to change land mask.", &
default=.false.)
call get_param(param_file, mdl, "MINIMUM_DEPTH", min_depth, &
"If MASKING_DEPTH is unspecified, then anything shallower than "//&
"MINIMUM_DEPTH is assumed to be land and all fluxes are masked out. "//&
"If MASKING_DEPTH is specified, then all depths shallower than "//&
"MINIMUM_DEPTH but deeper than MASKING_DEPTH are rounded to MINIMUM_DEPTH.", &
units="m", default=0.0, scale=m_to_Z)
call get_param(param_file, mdl, "MASKING_DEPTH", mask_depth, &
"The depth below which to mask points as land points, for which all "//&
"fluxes are zeroed out. MASKING_DEPTH needs to be smaller than MINIMUM_DEPTH", &
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Oops - this documentation string is different from elsewhere.

units="m", default=-9999.0, scale=m_to_Z)
if (mask_depth == -9999.*m_to_Z) mask_depth = min_depth

if (len_trim(topo_edits_file)==0) return

Expand Down Expand Up @@ -249,7 +260,7 @@ subroutine apply_topography_edits_from_file(D, G, param_file, US)
i = ig(n) - G%isd_global + 2 ! +1 for python indexing and +1 for ig-isd_global+1
j = jg(n) - G%jsd_global + 2
if (i>=G%isc .and. i<=G%iec .and. j>=G%jsc .and. j<=G%jec) then
if (new_depth(n)/=0.) then
if (new_depth(n)*m_to_Z /= mask_depth) then
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Although this isn't affecting my current test, I'm wondering if this should be (new_depth(n)*m_to_Z > mask_depth)

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Just realized that this comment (along with a few others) was not submitted successfully yesterday.

I guess we can gain more flexibility with (new_depth(n)*m_to_Z > mask_depth)? So that if one does decide to modify masks with topo_edit_file, they can use any large negative values, which makes the file universal across runs?

Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

It turns out there are zeroes in one of our edit files, which is why there's the ALLOW_LANDMASK_CHANGES parameter. I'll look it that later.

write(stdout,'(a,3i5,f8.2,a,f8.2,2i4)') &
'Ocean topography edit: ', n, ig(n), jg(n), D(i,j)/m_to_Z, '->', abs(new_depth(n)), i, j
D(i,j) = abs(m_to_Z*new_depth(n)) ! Allows for height-file edits (i.e. converts negatives)
Expand Down Expand Up @@ -434,6 +445,10 @@ subroutine limit_topography(D, G, param_file, max_depth, US)
do j=G%jsd,G%jed ; do i=G%isd,G%ied
if (D(i,j) > mask_depth) then
D(i,j) = min( max( D(i,j), min_depth ), max_depth )
else
! This statement is required for cases with masked-out PEs over the land,
! to remove the large initialized values (-9e30) from the halos.
D(i,j) = mask_depth
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@herrwang0 This seems to be the remaining source of answer changes. If MASKING_DEPTH is non-zero, this changes answers (determined by commenting it out).

endif
enddo ; enddo
endif
Expand Down