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infer_imagenet_resnet_101_5chan_v31.py
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infer_imagenet_resnet_101_5chan_v31.py
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from os import environ
from sys import argv
import tensor_utils_5_channels as utils
import numpy as np
import tensorflow as tf
from scipy.io import loadmat
from scipy.misc import imread
from skimage.transform import resize
def _input():
input_tensor = tf.placeholder(dtype=tf.float32, shape=[None, 224, 224, 3], name='input')
keep_prob = tf.placeholder(tf.float32, name="keep_prob")
is_training = tf.placeholder(tf.bool, name="is_training")
return input_tensor, keep_prob, is_training
def create_branch_layer_names(res_num, res_type, branch_type, branch_order=''):
if branch_type == 1 or branch_order == 'c':
name_list = [None] * 2
name_list[0] = 'res' + str(res_num) + res_type + '_branch' + str(branch_type) + branch_order
name_list[1] = 'bn' + str(res_num) + res_type + '_branch' + str(branch_type) + branch_order
else:
name_list = [None] * 3
name_list[0] = 'res' + str(res_num) + res_type + '_branch' + str(branch_type) + branch_order
name_list[1] = 'bn' + str(res_num) + res_type + '_branch' + str(branch_type) + branch_order
name_list[2] = 'res' + str(res_num) + res_type + '_branch' + str(branch_type) + branch_order + '_relu'
return name_list
def create_param_names_from_layers(layer_names):
param_list = [None] * 4
param_list[0] = layer_names[0] + '_filter'
param_list[1] = layer_names[1] + '_mult'
param_list[2] = layer_names[1] + '_bias'
param_list[3] = layer_names[1] + '_moments'
return param_list
def construct_batch_normalisation_block(current, net, weights, start_weight_index, param_names, layer_names, is_training):
scale = weights[start_weight_index + 1][1].reshape(-1)
scale = utils.get_variable(scale, name=param_names[1])
offset = weights[start_weight_index + 2][1].reshape(-1)
offset = utils.get_variable(offset, name=param_names[2])
mean = weights[start_weight_index + 3][1][:, 0].reshape(-1)
mean = utils.get_variable(mean, name=param_names[3] + '_mean')
variance = weights[start_weight_index + 3][1][:, 1].reshape(-1)
variance = utils.get_variable(variance * variance, name=param_names[3] + '_variance')
batch_mean, batch_var = tf.nn.moments(current, [0, 1, 2], name='batch_moments')
decay = 1 - weights[start_weight_index + 3][2][0][0]
ema = tf.train.ExponentialMovingAverage(decay=decay)
# decay = 0.9999
def mean_var_with_update():
ema_apply_op = ema.apply([batch_mean, batch_var])
with tf.control_dependencies([ema_apply_op]):
return tf.identity(batch_mean), tf.identity(batch_var)
mean, variance = tf.cond(is_training, mean_var_with_update, lambda: (ema.average(batch_mean), ema.average(batch_var)))
current = tf.nn.batch_normalization(current, mean, variance, offset, scale, 1e-5, name=layer_names[1])
net[layer_names[1]] = current
return current, net
def construct_conv_bn_block(current, net, weights, start_weight_index, param_names, layer_names, stride, keep_prob, is_training):
# conv
kernel = weights[start_weight_index][1]
if param_names[0] == 'conv1_filter':
np.random.seed(3796)
appended_kernel = np.random.normal(loc=0, scale=0.02, size=(7, 7, 2, 64)) # for 5 channels
kernel = np.concatenate((kernel, appended_kernel), axis=2)
else:
kernel = utils.get_variable(kernel, name=param_names[0])
if stride == 1:
current = tf.nn.conv2d(current, kernel, strides=[1, 1, 1, 1], padding='SAME', name=layer_names[0])
else:
kernel_size = kernel.shape[0]
padding = int((int(kernel_size) - 1) / 2)
current = tf.nn.conv2d(
tf.pad(current, tf.constant([[0, 0], [padding, padding], [padding, padding], [0, 0]])),
kernel, strides=[1, stride, stride, 1], padding='VALID', name=layer_names[0])
# net[layer_names[0]] = tf.nn.dropout(current, keep_prob=keep_prob)
# bn
# print(layer_names)
# print(param_names)
# print()
current, net = construct_batch_normalisation_block(current, net, weights, start_weight_index, param_names, layer_names, is_training)
return current, net
def construct_conv_bn_relu_block(current, net, weights, start_weight_index, param_names, layer_names, stride, keep_prob, is_training):
# conv_bn
current, net = construct_conv_bn_block(current, net, weights, start_weight_index, param_names, layer_names, stride, keep_prob, is_training)
# relu
current = tf.nn.relu(current, name=layer_names[2])
net[layer_names[2]] = current
return current, net
def construct_branch1_block(res_num, input_tensor, net, weights, start_param_index, first_conv_stride, keep_prob, is_training):
branch1_layer_names = create_branch_layer_names(res_num, res_type='a', branch_type=1)
branch1_param_names = create_param_names_from_layers(branch1_layer_names)
current, net = construct_conv_bn_block(input_tensor, net, weights, start_param_index, branch1_param_names, branch1_layer_names, first_conv_stride, keep_prob, is_training)
return current, net
def construct_branch2_block(res_num, res_type, input_tensor, net, weights, start_param_index, first_conv_stride, keep_prob, is_training):
branch2a_layer_names = create_branch_layer_names(res_num, res_type, branch_type=2, branch_order='a')
branch2a_param_names = create_param_names_from_layers(branch2a_layer_names)
current, net = construct_conv_bn_relu_block(input_tensor, net, weights, start_param_index, branch2a_param_names, branch2a_layer_names, first_conv_stride, keep_prob, is_training)
start_param_index += 4
branch2b_layer_names = create_branch_layer_names(res_num, res_type, branch_type=2, branch_order='b')
branch2b_param_names = create_param_names_from_layers(branch2b_layer_names)
current, net = construct_conv_bn_relu_block(current, net, weights, start_param_index, branch2b_param_names, branch2b_layer_names, 1, keep_prob, is_training)
start_param_index += 4
branch2c_layer_names = create_branch_layer_names(res_num, res_type, branch_type=2, branch_order='c')
branch2c_param_names = create_param_names_from_layers(branch2c_layer_names)
current, net = construct_conv_bn_block(current, net, weights, start_param_index, branch2c_param_names, branch2c_layer_names, 1, keep_prob, is_training)
start_param_index += 4
return current, net
def construct_res_xa_block(res_num, input_tensor, net, weights, start_param_index, keep_prob, is_training, down_sample=True):
# resxa_branch1 block
if down_sample == True:
first_conv_stride = 2
else:
first_conv_stride = 1
current, net = construct_branch1_block(res_num, input_tensor, net, weights, start_param_index, first_conv_stride, keep_prob, is_training)
bn_branch1 = current
start_param_index += 4
# resxa_branch2 block
current, net = construct_branch2_block(res_num, 'a', input_tensor, net, weights, start_param_index, first_conv_stride, keep_prob, is_training)
start_param_index += 12
current = tf.add(bn_branch1, current, name='res' + str(res_num) + 'a')
net['res' + str(res_num) + 'a'] = current
current = tf.nn.relu(current, name='res' + str(res_num) + 'a_relu')
net['res' + str(res_num) + 'a_relu'] = current
return current, net, start_param_index
def construct_res_xxx_block(res_num, res_type, input_tensor, net, weights, start_param_index, keep_prob, is_training):
current, net = construct_branch2_block(res_num, res_type, input_tensor, net, weights, start_param_index, 1, keep_prob, is_training)
start_param_index += 12
current = tf.add(input_tensor, current, name='res' + str(res_num) + res_type)
net['res' + str(res_num) + res_type] = current
current = tf.nn.relu(current, name='res' + str(res_num) + res_type + '_relu')
if 'res' + str(res_num) + res_type + '_relu' == 'res5c_relu':
net['res' + str(res_num) + res_type + '_relu'] = tf.nn.dropout(current, keep_prob=keep_prob)
else:
net['res' + str(res_num) + res_type + '_relu'] = current
return current, net, start_param_index
def resnet101_net(image, weights, keep_prob, is_training):
net = {}
current = image
start_param_index = 0
# conv1 block
conv1_layer_names = ['conv1', 'bn_conv1', 'conv1_relu', 'pool1']
conv1_param_names = create_param_names_from_layers(conv1_layer_names)
current, net = construct_conv_bn_relu_block(current, net, weights, start_param_index, conv1_param_names, conv1_layer_names, 2, keep_prob, is_training)
current = tf.nn.max_pool(current, ksize=[1, 3, 3, 1], strides=[1, 2, 2, 1], padding='SAME', name=conv1_layer_names[3])
net[conv1_layer_names[3]] = current
start_param_index += 4
current, net, start_param_index = construct_res_xa_block(2, current, net, weights, start_param_index, keep_prob, is_training, down_sample=False)
current, net, start_param_index = construct_res_xxx_block(2, 'b', current, net, weights, start_param_index, keep_prob, is_training)
current, net, start_param_index = construct_res_xxx_block(2, 'c', current, net, weights, start_param_index, keep_prob, is_training)
current, net, start_param_index = construct_res_xa_block(3, current, net, weights, start_param_index, keep_prob, is_training, down_sample=True)
for i in range(1, 4):
current, net, start_param_index = construct_res_xxx_block(3, 'b' + str(i), current, net, weights, start_param_index, keep_prob, is_training)
current, net, start_param_index = construct_res_xa_block(4, current, net, weights, start_param_index, keep_prob, is_training, down_sample=True)
for i in range(1, 23):
current, net, start_param_index = construct_res_xxx_block(4, 'b' + str(i), current, net, weights, start_param_index, keep_prob, is_training)
current, net, start_param_index = construct_res_xa_block(5, current, net, weights, start_param_index, keep_prob, is_training, down_sample=True)
current, net, start_param_index = construct_res_xxx_block(5, 'b', current, net, weights, start_param_index, keep_prob, is_training)
current, net, start_param_index = construct_res_xxx_block(5, 'c', current, net, weights, start_param_index, keep_prob, is_training)
current = tf.nn.avg_pool(current, ksize=[1, 7, 7, 1], strides=[1, 1, 1, 1], padding='VALID', name='pool5')
net['pool5'] = current
fc1000_kernel = utils.get_variable(weights[start_param_index][1], name='fc1000_filter')
fc1000_bias = utils.get_variable(weights[start_param_index + 1][1].reshape(-1), name='fc1000_bias')
current = tf.nn.bias_add(tf.nn.conv2d(current, fc1000_kernel, strides=[1, 1, 1, 1], padding="VALID"), fc1000_bias, name='fc1000')
net['fc1000'] = current
current = tf.nn.softmax(current, name='prob')
net['prob'] = current
return net
def inference(x, weights, keep_prob, is_training):
with tf.variable_scope("inference"):
image_net = resnet101_net(x, weights, keep_prob, is_training)
prediction = tf.argmax(image_net['prob'][0][0][0])
return prediction, image_net
def main(argv=None):
environ["CUDA_VISIBLE_DEVICES"] = argv[1]
resnet101_net = utils.get_model_data('../pretrained_models/imagenet-resnet-101-dag.mat')
weights = np.squeeze(resnet101_net['params'])
img = imread(argv[2])
mean = resnet101_net['meta'][0][0][2][0][0][2]
resized_img = resize(img, (224, 224), preserve_range=True, mode='reflect')
normalised_img = utils.process_image(resized_img, mean)
input_tensor, keep_prob, is_training = _input()
predicted_class, image_net = inference(input_tensor, weights, keep_prob, is_training)
sess = tf.Session()
sess.run(tf.global_variables_initializer())
score, category = sess.run([tf.reduce_max(image_net['prob'][0][0][0]), predicted_class],
feed_dict={input_tensor:normalised_img[np.newaxis, :, :, :].astype(np.float32), keep_prob: 1.0, is_training: False})
print('Category:', resnet101_net['meta'][0][0][1][0][0][1][0][category][0])
print('Score:', score)
# shape = sess.run(image_net['res5c_relu'], feed_dict={x:normalised_img[np.newaxis, :, :, :].astype(np.float32)}).shape
# print(shape)
if __name__ == "__main__":
tf.app.run()