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setup.py
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setup.py
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"""
MFEM + PyMFEM (finite element method library)
"""
from sys import platform
import sys
import os
import urllib
import gzip
import site
import re
import shutil
import configparser
import itertools
import subprocess
from subprocess import DEVNULL
import multiprocessing
from multiprocessing import Pool
# force fork instead of spawn on MacOS to avoid race condition on mfem/__init__.py
if platform == "darwin":
multiprocessing.set_start_method("fork")
from setuptools import setup, find_packages
from setuptools.command.build_py import build_py as _build_py
from setuptools.command.install import install as _install
from setuptools.command.install_egg_info import install_egg_info as _install_egg_info
from setuptools.command.install_lib import install_lib as _install_lib
from setuptools.command.install_scripts import install_scripts as _install_scripts
import setuptools.command.sdist
# this stops working after setuptools (56)
# try:
# from setuptools._distutils.command.clean import clean as _clean
# except ImportError:
from distutils.command.clean import clean as _clean
try:
from wheel.bdist_wheel import bdist_wheel as _bdist_wheel
haveWheel = True
except ImportError:
haveWheel = False
# To use a consistent encoding
# from codecs import open
# constants
repo_releases = {
"gklib": "https://github.com/KarypisLab/GKlib/archive/refs/tags/METIS-v5.1.1-DistDGL-0.5.tar.gz",
# "metis": "https://github.com/KarypisLab/METIS/archive/refs/tags/v5.1.1-DistDGL-v0.5.tar.gz",
# "metis": "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz",
"metis": "https://github.com/mfem/tpls/raw/gh-pages/metis-5.1.0.tar.gz",
"hypre": "https://github.com/hypre-space/hypre/archive/v2.28.0.tar.gz",
"libceed": "https://github.com/CEED/libCEED/archive/refs/tags/v0.12.0.tar.gz",
"gslib": "https://github.com/Nek5000/gslib/archive/refs/tags/v1.0.8.tar.gz"}
repos = {"mfem": "https://github.com/mfem/mfem.git",
"libceed": "https://github.com/CEED/libCEED.git",
"gklib": "https://github.com/KarypisLab/GKlib",
"metis": "https://github.com/KarypisLab/METIS", }
repos_sha = {
"mfem": "dc9128ef596e84daf1138aa3046b826bba9d259f", # v4.7
"gklib": "a7f8172703cf6e999dd0710eb279bba513da4fec",
"metis": "94c03a6e2d1860128c2d0675cbbb86ad4f261256", }
rootdir = os.path.abspath(os.path.dirname(__file__))
extdir = os.path.join(rootdir, 'external')
if not os.path.exists(extdir):
os.mkdir(os.path.join(rootdir, 'external'))
osx_sysroot = ''
if platform == "linux" or platform == "linux2":
dylibext = '.so'
elif platform == "darwin":
# OS X
dylibext = '.dylib'
import sysconfig
for i, x in enumerate(sysconfig.get_config_vars()['CFLAGS'].split()):
if x == '-isysroot':
osx_sysroot = sysconfig.get_config_vars()['CFLAGS'].split()[i+1]
break
elif platform == "win32":
# Windows...
assert False, "Windows is not supported yet. Contribution is welcome"
use_metis_gklib = False
# global variables
is_configured = False
prefix = ''
verbose = -1
git_sshclone = False
swig_only = False
skip_install = False
run_swig = False
clean_swig = False
build_mfem = False
mfem_branch = None
build_mfemp = False
build_metis = False
build_hypre = False
build_libceed = False
build_gslib = False
build_parallel = False
build_serial = False
ext_prefix = ''
mfems_prefix = ''
mfemp_prefix = ''
mfem_source = ''
metis_prefix = ''
hypre_prefix = ''
enable_cuda = False
enable_cuda_hypre = False
cuda_prefix = ''
cuda_arch = ''
enable_pumi = False
pumi_prefix = ''
enable_strumpack = False
strumpack_prefix = ''
enable_libceed = False
libceed_prefix = ''
libceed_only = False
enable_gslib = False
gslibs_prefix = ''
gslibp_prefix = ''
gslib_only = False
mfem_debug = False
enable_suitesparse = False
suitesparse_prefix = "/usr/"
enable_lapack = False
blas_libraries = ""
lapack_libraries = ""
dry_run = -1
do_bdist_wheel = False
cc_command = 'cc' if os.getenv("CC") is None else os.getenv("CC")
cxx_command = 'c++' if os.getenv("CC") is None else os.getenv("CXX")
mpicc_command = 'mpicc' if os.getenv("MPICC") is None else os.getenv("MPICC")
mpicxx_command = 'mpic++' if os.getenv(
"MPICXX") is None else os.getenv("MPICXX")
cxx11_flag = '-std=c++11' if os.getenv(
"CXX11FLAG") is None else os.getenv("CXX11FLAG")
use_unverifed_SSL = False if os.getenv(
"unverifedSSL") is None else os.getenv("unverifiedSSL")
# meta data
def version():
VERSIONFILE = os.path.join('mfem', '__init__.py')
initfile_lines = open(VERSIONFILE, 'rt').readlines()
VSRE = r"^__version__ = ['\"]([^'\"]*)['\"]"
for line in initfile_lines:
mo = re.search(VSRE, line, re.M)
if mo:
return mo.group(1)
raise RuntimeError('Unable to find version string in %s.' % (VERSIONFILE,))
def long_description():
with open(os.path.join(rootdir, 'README.md'), encoding='utf-8') as f:
return f.read()
def install_requires():
fname = os.path.join(rootdir, 'requirements.txt')
if not os.path.exists(fname):
return []
fid = open(fname)
requirements = fid.read().split('\n')
fid.close()
return requirements
def read_mfem_tplflags(prefix):
filename = os.path.join(prefix, 'share', 'mfem', 'config.mk')
if not os.path.exists(filename):
print("NOTE: " + filename + " does not exist.")
print("returning empty string")
return ""
config = configparser.ConfigParser()
with open(filename) as fp:
config.read_file(itertools.chain(['[global]'], fp), source=filename)
flags = dict(config.items('global'))['mfem_tplflags']
return flags
keywords = """
scientific computing
finite element method
"""
platforms = """
Mac OS X
Linux
"""
metadata = {'name': 'mfem',
'version': version(),
'description': __doc__.strip(),
'long_description': long_description(),
'long_description_content_type': "text/markdown",
'url': 'http://mfem.org',
'download_url': 'https://github.com/mfem',
'classifiers': ['Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
'Topic :: Scientific/Engineering :: Physics',
'License :: OSI Approved :: BSD License',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11', ],
'keywords': [k for k in keywords.split('\n') if k],
'platforms': [p for p in platforms.split('\n') if p],
'license': 'BSD-3',
'author': 'MFEM developement team',
'author_email': '',
'maintainer': 'S. Shiraiwa',
'maintainer_email': 'shiraiwa@princeton.edu', }
# utilities
def abspath(path):
return os.path.abspath(os.path.expanduser(path))
def external_install_prefix(verbose=True):
if hasattr(site, "getusersitepackages"):
usersite = site.getusersitepackages()
else:
usersite = site.USER_SITE
if verbose:
print("running external_install_prefix with the following parameters")
print(" sys.argv :", sys.argv)
print(" sys.prefix :", sys.prefix)
print(" usersite :", usersite)
print(" prefix :", prefix)
if '--user' in sys.argv:
path = usersite
if not os.path.exists(path):
os.makedirs(path)
path = os.path.join(path, 'mfem', 'external')
return path
else:
# when prefix is given...let's borrow pip._internal to find the location ;D
import pip._internal.locations
path = pip._internal.locations.get_scheme(
"mfem", prefix=prefix).purelib
if not os.path.exists(path):
os.makedirs(path)
path = os.path.join(path, 'mfem', 'external')
return path
'''
else:
py_version = '%s.%s' % (sys.version_info[0], sys.version_info[1])
paths = (s % (py_version) for s in (
sys.prefix + '/lib/python%s/dist-packages/',
sys.prefix + '/lib/python%s/site-packages/',
sys.prefix + '/local/lib/python%s/dist-packages/',
sys.prefix + '/local/lib/python%s/site-packages/',
'/Library/Python/%s/site-packages/',
))
for path in paths:
# if verbose:
# print("testing installation path", path)
if os.path.exists(path):
path = os.path.join(path, 'mfem', 'external')
return path
assert False, "no installation path found"
return None
'''
def find_command(name):
from shutil import which
return which(name)
swig_command = (find_command('swig') if os.getenv("SWIG") is None
else os.getenv("SWIG"))
if swig_command is None:
assert False, "SWIG is not installed (hint: pip install swig)"
def make_call(command, target='', force_verbose=False):
'''
call command
'''
print("calling ... " + " ".join(command))
if dry_run:
return
kwargs = {'universal_newlines': True}
myverbose = verbose or force_verbose
if not myverbose:
kwargs['stdout'] = DEVNULL
kwargs['stderr'] = DEVNULL
# else:
# kwargs['stdout'] = subprocess.PIPE
# kwargs['stderr'] = subprocess.STDOUT
p = subprocess.Popen(command, **kwargs)
p.communicate()
if p.returncode != 0:
if target == '':
target = " ".join(command)
print("Failed when calling command: " + target)
raise subprocess.CalledProcessError(p.returncode,
" ".join(command))
# subprocess.check_call(command, **kwargs)
# except subprocess.CalledProcessError:
# print(stdout)
def chdir(path):
'''
change directory
'''
pwd = os.getcwd()
os.chdir(path)
if verbose:
print("Moving to a directory : " + path)
return pwd
def remove_files(files):
for f in files:
if verbose:
print("Removing : " + f)
if dry_run:
continue
os.remove(f)
def make(target):
'''
make : add -j option automatically
'''
command = ['make', '-j', str(max((multiprocessing.cpu_count() - 1, 1)))]
make_call(command, target=target, force_verbose=True)
def make_install(target, prefix=None):
'''
make install
'''
command = ['make', 'install']
if prefix is not None:
command.append('prefix='+prefix)
make_call(command, target=target)
def download(xxx):
'''
download tar.gz from somewhere. xxx is name.
url is given by repos above
'''
from urllib import request
import ssl
import tarfile
if os.path.exists(os.path.join(extdir, xxx)):
print("Download " + xxx + " skipped. Use clean --all-exts if needed")
return
url = repo_releases[xxx]
print("Downloading :", url)
if use_unverifed_SSL:
ssl._create_default_https_context = ssl._create_unverified_context
ftpstream = request.urlopen(url)
targz = tarfile.open(fileobj=ftpstream, mode="r|gz")
targz.extractall(path=extdir)
os.rename(os.path.join(extdir, targz.getnames()[0].split('/')[0]),
os.path.join(extdir, xxx))
def gitclone(xxx, use_sha=False, branch='master'):
cwd = os.getcwd()
repo_xxx = os.path.join(extdir, xxx)
if os.path.exists(repo_xxx):
os.chdir(repo_xxx)
command = ['git', 'checkout', branch]
make_call(command)
command = ['git', 'pull']
make_call(command)
# print("Deleting the existing " + xxx)
# shutil.rmtree(repo_xxx)
else:
repo = repos[xxx]
if git_sshclone:
repo = repo.replace("https://github.com/", "git@github.com:")
os.chdir(extdir)
command = ['git', 'clone', repo, xxx]
make_call(command)
if not dry_run:
if not os.path.exists(repo_xxx):
print(repo_xxx + " does not exist. Check if git clone worked")
os.chdir(repo_xxx)
if use_sha:
sha = repos_sha[xxx]
command = ['git', 'checkout', sha]
else:
command = ['git', 'checkout', branch]
make_call(command)
os.chdir(cwd)
def record_mfem_sha(mfem_source):
pwd = chdir(mfem_source)
command = ['git', 'rev-parse', 'HEAD']
try:
sha = subprocess.run(
command, capture_output=True).stdout.decode().strip()
except subprocess.CalledProcessError:
print("subprocess failed to read sha...continuing w/o recording SHA")
sha = None
except BaseException:
print("subprocess failed to read sha...continuing w/o recording SHA")
sha = None
chdir(pwd)
sha_file = os.path.join('mfem', '__sha__.py')
fid = open(sha_file, 'w')
if sha is not None:
fid.write('mfem = "' + sha + '"')
fid.close()
def cmake(path, **kwargs):
'''
run cmake. must be called in the target directory
'''
command = ['cmake', path]
for key, value in kwargs.items():
command.append('-' + key + '=' + value)
if osx_sysroot != '':
command.append('-DCMAKE_OSX_SYSROOT=' + osx_sysroot)
make_call(command)
def find_libpath_from_prefix(lib, prefix0):
prefix0 = os.path.expanduser(prefix0)
prefix0 = abspath(prefix0)
soname = 'lib' + lib + dylibext
aname = 'lib' + lib + '.a'
path = os.path.join(prefix0, 'lib', soname)
if os.path.exists(path):
return path
else:
path = os.path.join(prefix0, 'lib64', soname)
if os.path.exists(path):
return path
path = os.path.join(prefix0, 'lib', aname)
if os.path.exists(path):
return path
else:
path = os.path.join(prefix0, 'lib64', aname)
if os.path.exists(path):
return path
print("Can not find library by find_libpath_from_prefix (continue)", lib, prefix0)
return ''
###
# build libraries
###
def cmake_make_hypre():
'''
build hypre
'''
if verbose:
print("Building hypre")
cmbuild = 'cmbuild'
path = os.path.join(extdir, 'hypre', 'src', cmbuild)
if os.path.exists(path):
print("working directory already exists!")
else:
os.makedirs(path)
pwd = chdir(path)
cmake_opts = {'DBUILD_SHARED_LIBS': '1',
'DHYPRE_INSTALL_PREFIX': hypre_prefix,
'DHYPRE_ENABLE_SHARED': '1',
'DCMAKE_C_FLAGS': '-fPIC',
'DCMAKE_INSTALL_PREFIX': hypre_prefix,
'DCMAKE_INSTALL_NAME_DIR': os.path.join(hypre_prefix, 'lib'), }
if verbose:
cmake_opts['DCMAKE_VERBOSE_MAKEFILE'] = '1'
if enable_cuda and enable_cuda_hypre:
# in this case, settitng CMAKE_C_COMPILER
# causes "mpi.h" not found error. For now, letting CMAKE
# to find MPI
cmake_opts['DHYPRE_WITH_CUDA'] = '1'
if cuda_arch != '':
cmake_opts['DCMAKE_CUDA_ARCHITECTURES'] = cuda_arch
else:
cmake_opts['DCMAKE_C_COMPILER'] = mpicc_command
cmake('..', **cmake_opts)
make('hypre')
make_install('hypre')
os.chdir(pwd)
def make_metis_gklib(use_int64=False, use_real64=False):
'''
build GKlib/metis
'''
'''
build/install GKlib
'''
if verbose:
print("Building gklib")
path = os.path.join(extdir, 'gklib')
if not dry_run and not os.path.exists(path):
assert False, "gklib is not downloaded"
path = os.path.join(path, 'cmbuild')
if os.path.exists(path):
print("working directory already exists!")
else:
os.makedirs(path)
pwd = chdir(path)
cmake_opts = {'DBUILD_SHARED_LIBS': '1',
'DCMAKE_INSTALL_PREFIX': metis_prefix}
if verbose:
cmake_opts['DCMAKE_VERBOSE_MAKEFILE'] = '1'
cmake('..', **cmake_opts)
make('gklib')
make_install('gklib')
# command = ['make', 'prefix=' + metis_prefix, 'cc=' + cc_command]
os.chdir(pwd)
'''
build/install metis
'''
path = os.path.join(extdir, 'metis')
if not dry_run and not os.path.exists(path):
assert False, "metis is not downloaded"
elif not os.path.exists(path):
os.makedirs(path)
os.makedirs(os.path.join(path, 'build'))
pwd = chdir(path)
gklibpath = os.path.dirname(find_libpath_from_prefix(
'GKlib', metis_prefix))
options = ['gklib_path='+metis_prefix]
if use_int64:
options.append('i64=1')
if use_real64:
options.append('r64=1')
command = ['make', 'config', 'shared=1'] + options
# command = ['make', 'config'] + options
command = command + ['prefix=' + metis_prefix, 'cc=' + cc_command]
make_call(command)
chdir('build')
cmake_opts = {'DGKLIB_PATH': metis_prefix,
'DSHARED': '1',
'DCMAKE_C_COMPILER': cc_command,
'DCMAKE_C_STANDARD_LIBRARIES': '-lGKlib',
'DCMAKE_INSTALL_RPATH': gklibpath,
'DCMAKE_BUILD_WITH_INSTALL_RPATH': '1',
'DCMAKE_INSTALL_PREFIX': metis_prefix}
if verbose:
cmake_opts['DCMAKE_VERBOSE_MAKEFILE'] = '1'
cmake('..', **cmake_opts)
chdir(path)
make('metis')
make_install('metis')
if platform == "darwin":
command = ['install_name_tool',
'-id',
os.path.join(metis_prefix, 'lib', 'libGKlib.dylib'),
os.path.join(metis_prefix, 'lib', 'libGKlib.dylib'), ]
make_call(command)
command = ['install_name_tool',
'-id',
os.path.join(metis_prefix, 'lib', 'libmetis.dylib'),
os.path.join(metis_prefix, 'lib', 'libmetis.dylib'), ]
make_call(command)
os.chdir(pwd)
def make_metis(use_int64=False, use_real64=False):
'''
build metis
'''
if verbose:
print("Building metis")
path = os.path.join(extdir, 'metis')
if not os.path.exists(path):
assert False, "metis is not downloaded"
pwd = chdir(path)
if use_int64:
pattern_int = "#define IDXTYPEWIDTH 32"
replace_int = "#define IDXTYPEWIDTH 64"
else:
pattern_int = "#define IDXTYPEWIDTH 64"
replace_int = "#define IDXTYPEWIDTH 32"
with open("include/metis.h", "r") as metis_header_fid:
metis_header_lines = metis_header_fid.readlines()
with open("include/metis.h", "w") as metis_header_fid:
for line in metis_header_lines:
metis_header_fid.write(re.sub(pattern_int, replace_int, line))
if use_real64:
pattern_real = "#define REALTYPEWIDTH 32"
replace_real = "#define REALTYPEWIDTH 64"
else:
pattern_real = "#define REALTYPEWIDTH 64"
replace_real = "#define REALTYPEWIDTH 32"
with open("include/metis.h", "r") as metis_header_fid:
metis_header_lines = metis_header_fid.readlines()
with open("include/metis.h", "w") as metis_header_fid:
for line in metis_header_lines:
metis_header_fid.write(re.sub(pattern_real, replace_real, line))
command = ['make', 'config', 'shared=1',
'prefix=' + metis_prefix,
'cc=' + cc_command]
make_call(command)
make('metis')
make_install('metis')
if platform == "darwin":
command = ['install_name_tool',
'-id',
os.path.join(metis_prefix, 'lib', 'libmetis.dylib'),
os.path.join(metis_prefix, 'lib', 'libmetis.dylib'), ]
make_call(command)
os.chdir(pwd)
def make_libceed(serial=False):
if verbose:
print("Building libceed")
path = os.path.join(extdir, 'libceed')
if not os.path.exists(path):
assert False, "libceed is not downloaded"
pwd = chdir(path)
try:
make_call(['make', 'clean'])
except:
pass
if enable_cuda:
command = ['make', 'configure', 'CUDA_DIR='+cuda_prefix]
make_call(command)
make('libceed')
make_install('libceed', prefix=libceed_prefix)
os.chdir(pwd)
def make_gslib(serial=False):
if verbose:
print("Building gslib")
path = os.path.join(extdir, 'gslib')
if not os.path.exists(path):
assert False, "gslib is not downloaded"
pwd = chdir(path)
make_call(['make', 'clean'])
if serial:
command = ['make', 'CC=' + cc_command, 'MPI=0', 'CFLAGS=-fPIC']
make_call(command)
command = ['make', 'MPI=0', 'DESTDIR=' + gslibs_prefix]
make_call(command)
else:
command = ['make', 'CC=' + mpicc_command, 'CFLAGS=-O2 -fPIC']
make_call(command)
command = ['make', 'DESTDIR=' + gslibp_prefix]
make_call(command)
os.chdir(pwd)
def cmake_make_mfem(serial=True):
'''
build MFEM
'''
cmbuild = 'cmbuild_ser' if serial else 'cmbuild_par'
path = os.path.join(extdir, 'mfem', cmbuild)
if os.path.exists(path):
print("working directory already exists!")
else:
os.makedirs(path)
ldflags = os.getenv('LDFLAGS') if os.getenv('LDFLAGS') is not None else ''
metisflags = ''
hypreflags = ''
rpaths = []
def add_rpath(p):
if not p in rpaths:
rpaths.append(p)
cmake_opts = {'DBUILD_SHARED_LIBS': '1',
'DMFEM_ENABLE_EXAMPLES': '1',
'DMFEM_ENABLE_MINIAPPS': '1',
'DCMAKE_SHARED_LINKER_FLAGS': ldflags,
'DMFEM_USE_ZLIB': '1',
'DCMAKE_CXX_FLAGS': cxx11_flag,
'DCMAKE_BUILD_WITH_INSTALL_RPATH': '1'}
if mfem_debug:
cmake_opts['DMFEM_DEBUG'] = 'YES'
if verbose:
cmake_opts['DCMAKE_VERBOSE_MAKEFILE'] = '1'
if serial:
cmake_opts['DCMAKE_CXX_COMPILER'] = cxx_command
cmake_opts['DMFEM_USE_EXCEPTIONS'] = '1'
cmake_opts['DCMAKE_INSTALL_PREFIX'] = mfems_prefix
add_rpath(os.path.join(mfems_prefix, 'lib'))
if enable_suitesparse:
enable_metis = True
else:
enable_metis = False
else:
cmake_opts['DCMAKE_CXX_COMPILER'] = mpicxx_command
cmake_opts['DMFEM_USE_EXCEPTIONS'] = '0'
cmake_opts['DCMAKE_INSTALL_PREFIX'] = mfemp_prefix
cmake_opts['DMFEM_USE_MPI'] = '1'
cmake_opts['DHYPRE_DIR'] = hypre_prefix
cmake_opts['DHYPRE_INCLUDE_DIRS'] = os.path.join(
hypre_prefix, "include")
add_rpath(os.path.join(mfemp_prefix, 'lib'))
hyprelibpath = os.path.dirname(
find_libpath_from_prefix(
'HYPRE', hypre_prefix))
add_rpath(hyprelibpath)
hypreflags = "-L" + hyprelibpath + " -lHYPRE "
if enable_strumpack:
cmake_opts['DMFEM_USE_STRUMPACK'] = '1'
cmake_opts['DSTRUMPACK_DIR'] = strumpack_prefix
libpath = os.path.dirname(
find_libpath_from_prefix("STRUMPACK", strumpack_prefix))
add_rpath(libpath)
if enable_pumi:
cmake_opts['DMFEM_USE_PUMI'] = '1'
cmake_opts['DPUMI_DIR'] = pumi_prefix
libpath = os.path.dirname(
find_libpath_from_prefix("pumi", strumpack_prefix))
add_rpath(libpath)
enable_metis = True
if enable_metis:
cmake_opts['DMFEM_USE_METIS_5'] = '1'
cmake_opts['DMETIS_DIR'] = metis_prefix
cmake_opts['DMETIS_INCLUDE_DIRS'] = os.path.join(
metis_prefix, "include")
metislibpath = os.path.dirname(
find_libpath_from_prefix(
'metis', metis_prefix))
add_rpath(metislibpath)
if use_metis_gklib:
metisflags = "-L" + metislibpath + " -lmetis -lGKlib "
else:
metisflags = "-L" + metislibpath + " -lmetis "
if ldflags != '':
cmake_opts['DCMAKE_SHARED_LINKER_FLAGS'] = ldflags
cmake_opts['DCMAKE_EXE_LINKER_FLAGS'] = ldflags
if metisflags != '':
cmake_opts['DMETIS_LIBRARIES'] = metisflags
if hypreflags != '':
cmake_opts['DHYPRE_LIBRARIES'] = hypreflags
if enable_cuda:
cmake_opts['DMFEM_USE_CUDA'] = '1'
if cuda_arch != '':
cmake_opts['DCMAKE_CUDA_ARCHITECTURES'] = cuda_arch
if enable_libceed:
cmake_opts['DMFEM_USE_CEED'] = '1'
cmake_opts['DCEED_DIR'] = libceed_prefix
libpath = os.path.dirname(
find_libpath_from_prefix("ceed", libceed_prefix))
add_rpath(libpath)
if enable_gslib:
if serial:
cmake_opts['DMFEM_USE_GSLIB'] = '1'
cmake_opts['DGSLIB_DIR'] = gslibs_prefix
else:
cmake_opts['DMFEM_USE_GSLIB'] = '1'
cmake_opts['DGSLIB_DIR'] = gslibp_prefix
if enable_suitesparse:
cmake_opts['DMFEM_USE_SUITESPARSE'] = '1'
if suitesparse_prefix != '':
cmake_opts['DSuiteSparse_DIR'] = suitesparse_prefix
if enable_lapack:
cmake_opts['DMFEM_USE_LAPACK'] = '1'
if blas_libraries != "":
cmake_opts['DBLAS_LIBRARIES'] = blas_libraries
if lapack_libraries != "":
cmake_opts['DLAPACK_LIBRARIES'] = lapack_libraries
cmake_opts['DCMAKE_INSTALL_RPATH'] = ":".join(rpaths)
pwd = chdir(path)
cmake('..', **cmake_opts)
txt = 'serial' if serial else 'parallel'
make('mfem_' + txt)
make_install('mfem_' + txt)
from shutil import copytree, rmtree
print("copying mesh data for testing", "../data",
cmake_opts['DCMAKE_INSTALL_PREFIX'])
path = os.path.join(cmake_opts['DCMAKE_INSTALL_PREFIX'], "data")
if os.path.exists(path):
rmtree(path)
copytree("../data", path)
if do_bdist_wheel:
ex_dir = os.path.join(cmake_opts['DCMAKE_INSTALL_PREFIX'], "examples")
for x in os.listdir(ex_dir):
path = os.path.join(ex_dir, x)
command = ['chrpath', '-r', "$ORIGIN/../lib", path]
make_call(command, force_verbose=True)
os.chdir(pwd)
def write_setup_local():
'''
create setup_local.py. parameters written here will be read
by setup.py in mfem._ser and mfem._par
'''
import numpy
# if build_mfem:
# mfemser = os.path.join(prefix, 'mfem', 'ser')
# mfempar = os.path.join(prefix, 'mfem', 'par')
# else:
mfemser = mfems_prefix
mfempar = mfemp_prefix
hyprelibpath = os.path.dirname(
find_libpath_from_prefix('HYPRE', hypre_prefix))
metislibpath = os.path.dirname(
find_libpath_from_prefix('metis', metis_prefix))
mfems_tpl = read_mfem_tplflags(mfems_prefix)
mfemp_tpl = read_mfem_tplflags(mfemp_prefix) if build_parallel else ''
print(mfems_tpl, mfemp_tpl)
params = {'cxx_ser': cxx_command,
'cc_ser': cc_command,
'cxx_par': mpicxx_command,
'cc_par': mpicc_command,
'whole_archive': '--whole-archive',
'no_whole_archive': '--no-whole-archive',
'nocompactunwind': '',
'swigflag': '-Wall -c++ -python -fastproxy -olddefs -keyword',
'hypreinc': os.path.join(hypre_prefix, 'include'),
'hyprelib': hyprelibpath,
'metisinc': os.path.join(metis_prefix, 'include'),
'metis5lib': metislibpath,
'numpync': numpy.get_include(),
'mfembuilddir': os.path.join(mfempar, 'include'),
'mfemincdir': os.path.join(mfempar, 'include', 'mfem'),
'mfemlnkdir': os.path.join(mfempar, 'lib'),
'mfemserbuilddir': os.path.join(mfemser, 'include'),
'mfemserincdir': os.path.join(mfemser, 'include', 'mfem'),
'mfemserlnkdir': os.path.join(mfemser, 'lib'),
'mfemsrcdir': os.path.join(mfem_source),
'mfemstpl': mfems_tpl,
'mfemptpl': mfemp_tpl,
'add_pumi': '',
'add_strumpack': '',
'add_cuda': '',
'add_libceed': '',
'add_suitesparse': '',
'add_gslib': '',
'add_gslibp': '',
'add_gslibs': '',
'libceedinc': os.path.join(libceed_prefix, 'include'),
'gslibsinc': os.path.join(gslibs_prefix, 'include'),
'gslibpinc': os.path.join(gslibp_prefix, 'include'),
'cxx11flag': cxx11_flag,
'build_mfem': '1' if build_mfem else '0'
}
try:
import mpi4py # avaialbility of this is checked before
params['mpi4pyinc'] = mpi4py.get_include()
except ImportError:
params['mpi4pyinc'] = ''
def add_extra(xxx, inc_sub=None):
params['add_' + xxx] = '1'
if inc_sub is None:
params[xxx +
'inc'] = os.path.join(globals()[xxx +
'_prefix'], 'include')
else:
params[xxx +
'inc'] = os.path.join(globals()[xxx +
'_prefix'], 'include', inc_sub)
params[xxx + 'lib'] = os.path.join(globals()[xxx + '_prefix'], 'lib')
if enable_pumi:
add_extra('pumi')
if enable_strumpack:
add_extra('strumpack')
if enable_cuda:
add_extra('cuda')
if enable_libceed:
add_extra('libceed')
if enable_suitesparse:
add_extra('suitesparse', inc_sub='suitesparse')
if enable_gslib:
add_extra('gslibs')
if enable_gslib:
add_extra('gslibp')
pwd = chdir(rootdir)
fid = open('setup_local.py', 'w')
fid.write("# setup_local.py \n")
fid.write("# generated from setup.py\n")
fid.write("# do not edit this directly\n")
for key, value in params.items():
text = key.lower() + ' = "' + value + '"'
fid.write(text + "\n")
fid.close()