Merge pull request #13 from martibosch/develop

Move `_gaussain_kernel1d` from scipy to the detectree codebase.

.github/workflows/dev.yml

@@ -0,0 +1,69 @@
+name: dev
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+jobs:
+  lint:
+    runs-on: ubuntu-latest
+    steps:
+
+      - name: checkout code repository
+        uses: actions/checkout@v3
+
+      - name: run pre-commit
+        uses: pre-commit/action@v3.0.0
+
+  tests:
+
+    name: Python ${{ matrix.python-version }} ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest]
+        python-version: ['3.7', '3.8', '3.9', '3.10']
+        include:
+          - environment-file: environment-dev.yml
+            miniforge-variant: Mambaforge
+            miniforge-version: 4.14.0-0
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v2
+
+      - name: setup conda environment with mambaforge
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          use-mamba: true
+          activate-environment: detectree-dev
+          python-version: ${{ matrix.python-version }}
+          condarc-file: ${{ matrix.condarc-file }}
+          environment-file: ${{ matrix.environment-file }}
+          miniforge-variant: ${{ matrix.miniforge-variant }}
+          miniforge-version: ${{ matrix.miniforge-version }}
+
+      - name: install detectree
+        run: |
+          pip install .
+          conda list
+          conda info --all
+
+      - name: test docs
+        run: make -C ./docs html
+
+      - name: test code
+        run: |
+          coverage run --source ./detectree --module pytest --verbose
+          coverage xml -i
+          coverage report -m
+
+      - name: upload coverage report
+        uses: codecov/codecov-action@v3

.pre-commit-config.yaml

@@ -1,35 +1,38 @@
-exclude: 'docs|node_modules|migrations|.git|.tox'
+exclude: 'docs|node_modules|migrations|.tox'
 default_stages: [commit]
 fail_fast: true
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v4.3.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
       - id: check-yaml
 
+  - repo: https://github.com/python-jsonschema/check-jsonschema
+    rev: 0.18.2
+    hooks:
+      - id: check-github-workflows
+
   - repo: https://github.com/psf/black
-    rev: 21.5b1
+    rev: 22.10.0
     hooks:
       - id: black
 
   - repo: https://github.com/timothycrosley/isort
-    rev: 5.8.0
+    rev: 5.10.1
     hooks:
       - id: isort
 
   - repo: https://gitlab.com/pycqa/flake8
-    rev: 3.9.2
+    rev: 5.0.4
     hooks:
       - id: flake8
-        args: ['--config=setup.cfg']
         additional_dependencies: [flake8-isort]
 
   - repo: https://github.com/pycqa/pydocstyle
     rev: 6.1.1
     hooks:
       - id: pydocstyle
         files: ^detectree
-        args: ['--config=setup.cfg']