translate_notebooks_to_rst.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Translate Notebooks\n",
    "\n",
    "This preprocesses all the ipython notebooks over to rst files so that sphinx can import them."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import glob\n",
    "import os.path"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['source/analyses/data_handling/exogenous_timeseries.ipynb',\n",
       " 'source/analyses/data_handling/exogenous_timeseries_Workbook.ipynb',\n",
       " 'source/analyses/data_handling/pandas.ipynb',\n",
       " 'source/analyses/data_handling/pandas_Workbook.ipynb',\n",
       " 'source/analyses/data_handling/Writing_to_Database.ipynb',\n",
       " 'source/analyses/design_policy/PySD EMA Connector Demo.ipynb',\n",
       " 'source/analyses/fitting/Fitting_with_Optimization-Copy1.ipynb',\n",
       " 'source/analyses/fitting/Fitting_with_Optimization.ipynb',\n",
       " 'source/analyses/fitting/Fitting_with_Optimization_Workbook.ipynb',\n",
       " 'source/analyses/fitting/Massively_Parallel_Fitting.ipynb',\n",
       " 'source/analyses/fitting/MCMC_for_fitting_models.ipynb',\n",
       " 'source/analyses/fitting/MCMC_for_fitting_models_Workbook.ipynb',\n",
       " 'source/analyses/fitting/Penny_Jar.ipynb',\n",
       " 'source/analyses/fitting/Step_at_a_time_optimization.ipynb',\n",
       " 'source/analyses/fitting/Step_at_a_time_optimization_Workbook.ipynb',\n",
       " 'source/analyses/geo/Doing_more_with_spatialdata_multi_regional_SIR_Model.ipynb',\n",
       " 'source/analyses/geo/Exploring_models_across_geographic_scales.ipynb',\n",
       " 'source/analyses/getting_started/Git_and_Github.ipynb',\n",
       " 'source/analyses/getting_started/Hello_World_Teacup.ipynb',\n",
       " 'source/analyses/getting_started/Hello_World_Teacup_Workbook.ipynb',\n",
       " 'source/analyses/getting_started/Installing.ipynb',\n",
       " 'source/analyses/getting_started/Introduction.ipynb',\n",
       " 'source/analyses/getting_started/Notebook.ipynb',\n",
       " 'source/analyses/getting_started/PySD_Challenge_1.ipynb',\n",
       " 'source/analyses/getting_started/PySD_Challenge_1_Workbook.ipynb',\n",
       " 'source/analyses/getting_started/Python.ipynb',\n",
       " 'source/analyses/getting_started/Python_Workbook.ipynb',\n",
       " 'source/analyses/getting_started/Untitled.ipynb',\n",
       " 'source/analyses/model_comparison/Comparing_Models.ipynb',\n",
       " 'source/analyses/model_comparison/Designing_Experiments.ipynb',\n",
       " 'source/analyses/realtime/Nth_Order_Delay_Demo.ipynb',\n",
       " 'source/analyses/realtime/Twitter_Stream.ipynb',\n",
       " 'source/analyses/sensitivity/Latin_Hypercube_Sampling.ipynb',\n",
       " 'source/analyses/surrogating_functions/Surrogating_with_regression.ipynb',\n",
       " 'source/analyses/surrogating_functions/Surrogating_with_regression_Workbook.ipynb',\n",
       " 'source/analyses/Testing/Testing_Behavior-Copy1.ipynb',\n",
       " 'source/analyses/Testing/Testing_Behavior.ipynb',\n",
       " 'source/analyses/Testing/Untitled.ipynb',\n",
       " 'source/analyses/visualization/delete_me.ipynb',\n",
       " 'source/analyses/visualization/Marginal Density Plot - Interactive.ipynb',\n",
       " 'source/analyses/visualization/Marginal Density Plot.ipynb',\n",
       " 'source/analyses/visualization/matplotlib.ipynb',\n",
       " 'source/analyses/visualization/matplotlib_Workbook.ipynb',\n",
       " 'source/analyses/visualization/other_visualization_libraries.ipynb',\n",
       " 'source/analyses/visualization/phase_portraits.ipynb',\n",
       " 'source/analyses/visualization/plotting_suite_of_simulations.ipynb',\n",
       " 'source/analyses/workflow/Unit_Testing.ipynb',\n",
       " 'source/analyses/wrapper_EMAWorkbench/Minimal Example PySD with EMA.ipynb',\n",
       " 'source/data/Baby_Names/Baby_Name_Data.ipynb',\n",
       " 'source/data/Census/US_Census_Data_Collection.ipynb',\n",
       " 'source/data/Climate/sources.ipynb',\n",
       " 'source/data/Defects_Synthetic/Manufacturing_Defects_Synthetic.ipynb',\n",
       " 'source/data/Ebola/Ebola_Data_Loader.ipynb',\n",
       " 'source/data/Emails/Email_Data_Formatter.ipynb',\n",
       " 'source/data/MA_Towns/Town_Formatter.ipynb',\n",
       " 'source/data/SD_Fever/Prepare Data.ipynb']"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "notebooks = glob.glob('source/analyses/*/*.ipynb')\n",
    "notebooks += glob.glob('source/data/*/*.ipynb')\n",
    "notebooks"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook exogenous_timeseries.ipynb to rst\n",
      "[NbConvertApp] Support files will be in exogenous_timeseries_files/\n",
      "[NbConvertApp] Making directory exogenous_timeseries_files\n",
      "[NbConvertApp] Writing 6418 bytes to exogenous_timeseries.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook exogenous_timeseries_Workbook.ipynb to rst\n",
      "[NbConvertApp] Support files will be in exogenous_timeseries_Workbook_files/\n",
      "[NbConvertApp] Making directory exogenous_timeseries_Workbook_files\n",
      "[NbConvertApp] Writing 7317 bytes to exogenous_timeseries_Workbook.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook pandas.ipynb to rst\n",
      "[NbConvertApp] Writing 32136 bytes to pandas.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook pandas_Workbook.ipynb to rst\n",
      "[NbConvertApp] Writing 7315 bytes to pandas_Workbook.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Writing_to_Database.ipynb to rst\n",
      "[NbConvertApp] Writing 3438 bytes to Writing_to_Database.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook PySD EMA Connector Demo.ipynb to rst\n",
      "[NbConvertApp] Support files will be in PySD EMA Connector Demo_files/\n",
      "[NbConvertApp] Making directory PySD EMA Connector Demo_files\n",
      "[NbConvertApp] Writing 1452 bytes to PySD EMA Connector Demo.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "[NbConvertApp] Converting notebook Fitting_with_Optimization-Copy1.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Fitting_with_Optimization.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "[NbConvertApp] Converting notebook Fitting_with_Optimization_Workbook.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Massively_Parallel_Fitting.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Massively_Parallel_Fitting_files/\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook MCMC_for_fitting_models.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "[NbConvertApp] Converting notebook MCMC_for_fitting_models_Workbook.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "[NbConvertApp] Converting notebook Penny_Jar.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "[NbConvertApp] Converting notebook Step_at_a_time_optimization.ipynb to rst\n",
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      "\n",
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      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "[NbConvertApp] Converting notebook Step_at_a_time_optimization_Workbook.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "[NbConvertApp] Converting notebook Doing_more_with_spatialdata_multi_regional_SIR_Model.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "\n",
      "\n",
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      "\n",
      "\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "\n",
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      "\n",
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      "\n",
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      "\n",
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      "\n",
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      "\n",
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      "\n",
      "\n",
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      "[NbConvertApp] Converting notebook Untitled.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "[NbConvertApp] Converting notebook Comparing_Models.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "[NbConvertApp] Converting notebook Designing_Experiments.ipynb to rst\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
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      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Twitter_Stream.ipynb to rst\n",
      "[NbConvertApp] Writing 8696 bytes to Twitter_Stream.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Latin_Hypercube_Sampling.ipynb to rst\n",
      "[NbConvertApp] Writing 10443 bytes to Latin_Hypercube_Sampling.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Surrogating_with_regression.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Surrogating_with_regression_files/\n",
      "[NbConvertApp] Making directory Surrogating_with_regression_files\n",
      "[NbConvertApp] Making directory Surrogating_with_regression_files\n",
      "[NbConvertApp] Writing 3816 bytes to Surrogating_with_regression.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Surrogating_with_regression_Workbook.ipynb to rst\n",
      "[NbConvertApp] Writing 1871 bytes to Surrogating_with_regression_Workbook.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Testing_Behavior-Copy1.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Testing_Behavior-Copy1_files/\n",
      "[NbConvertApp] Making directory Testing_Behavior-Copy1_files\n",
      "[NbConvertApp] Writing 10616 bytes to Testing_Behavior-Copy1.rst\n",
      "mv: rename source/analyses/Testing/Testing_Behavior-Copy1_files to docs/analyses/Testing: Not a directory\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Testing_Behavior.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Testing_Behavior_files/\n",
      "[NbConvertApp] Making directory Testing_Behavior_files\n",
      "[NbConvertApp] Writing 10604 bytes to Testing_Behavior.rst\n",
      "mv: rename source/analyses/Testing/Testing_Behavior_files to docs/analyses/Testing: Not a directory\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Untitled.ipynb to rst\n",
      "[NbConvertApp] Writing 2256 bytes to Untitled.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook delete_me.ipynb to rst\n",
      "[NbConvertApp] Support files will be in delete_me_files/\n",
      "[NbConvertApp] Making directory delete_me_files\n",
      "[NbConvertApp] Making directory delete_me_files\n",
      "[NbConvertApp] Writing 34932 bytes to delete_me.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Marginal Density Plot - Interactive.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Marginal Density Plot - Interactive_files/\n",
      "[NbConvertApp] Making directory Marginal Density Plot - Interactive_files\n",
      "[NbConvertApp] Making directory Marginal Density Plot - Interactive_files\n",
      "[NbConvertApp] Making directory Marginal Density Plot - Interactive_files\n",
      "[NbConvertApp] Writing 86775 bytes to Marginal Density Plot - Interactive.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Marginal Density Plot.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Marginal Density Plot_files/\n",
      "[NbConvertApp] Making directory Marginal Density Plot_files\n",
      "[NbConvertApp] Writing 7964 bytes to Marginal Density Plot.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook matplotlib.ipynb to rst\n",
      "[NbConvertApp] Support files will be in matplotlib_files/\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Making directory matplotlib_files\n",
      "[NbConvertApp] Writing 9390 bytes to matplotlib.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook matplotlib_Workbook.ipynb to rst\n",
      "[NbConvertApp] Writing 6426 bytes to matplotlib_Workbook.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook other_visualization_libraries.ipynb to rst\n",
      "[NbConvertApp] Support files will be in other_visualization_libraries_files/\n",
      "[NbConvertApp] Making directory other_visualization_libraries_files\n",
      "[NbConvertApp] Writing 409116 bytes to other_visualization_libraries.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook phase_portraits.ipynb to rst\n",
      "[NbConvertApp] Support files will be in phase_portraits_files/\n",
      "[NbConvertApp] Making directory phase_portraits_files\n",
      "[NbConvertApp] Writing 4746 bytes to phase_portraits.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook plotting_suite_of_simulations.ipynb to rst\n",
      "[NbConvertApp] Support files will be in plotting_suite_of_simulations_files/\n",
      "[NbConvertApp] Making directory plotting_suite_of_simulations_files\n",
      "[NbConvertApp] Making directory plotting_suite_of_simulations_files\n",
      "[NbConvertApp] Writing 10757 bytes to plotting_suite_of_simulations.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Unit_Testing.ipynb to rst\n",
      "[NbConvertApp] Writing 800 bytes to Unit_Testing.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Minimal Example PySD with EMA.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Minimal Example PySD with EMA_files/\n",
      "[NbConvertApp] Making directory Minimal Example PySD with EMA_files\n",
      "[NbConvertApp] Making directory Minimal Example PySD with EMA_files\n",
      "[NbConvertApp] Making directory Minimal Example PySD with EMA_files\n",
      "[NbConvertApp] Writing 6616 bytes to Minimal Example PySD with EMA.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Baby_Name_Data.ipynb to rst\n",
      "[NbConvertApp] Writing 943 bytes to Baby_Name_Data.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook US_Census_Data_Collection.ipynb to rst\n",
      "[NbConvertApp] Writing 54172 bytes to US_Census_Data_Collection.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook sources.ipynb to rst\n",
      "[NbConvertApp] Writing 631 bytes to sources.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Manufacturing_Defects_Synthetic.ipynb to rst\n",
      "[NbConvertApp] Writing 1993 bytes to Manufacturing_Defects_Synthetic.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Ebola_Data_Loader.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Ebola_Data_Loader_files/\n",
      "[NbConvertApp] Making directory Ebola_Data_Loader_files\n",
      "[NbConvertApp] Writing 7266 bytes to Ebola_Data_Loader.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Email_Data_Formatter.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Email_Data_Formatter_files/\n",
      "[NbConvertApp] Making directory Email_Data_Formatter_files\n",
      "[NbConvertApp] Writing 8080 bytes to Email_Data_Formatter.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Town_Formatter.ipynb to rst\n",
      "[NbConvertApp] Writing 7835 bytes to Town_Formatter.rst\n",
      "\n",
      "\n",
      "[TerminalIPythonApp] WARNING | Subcommand `ipython nbconvert` is deprecated and will be removed in future versions.\n",
      "[TerminalIPythonApp] WARNING | You likely want to use `jupyter nbconvert` in the future\n",
      "[NbConvertApp] Converting notebook Prepare Data.ipynb to rst\n",
      "[NbConvertApp] Support files will be in Prepare Data_files/\n",
      "[NbConvertApp] Making directory Prepare Data_files\n",
      "[NbConvertApp] Writing 16822 bytes to Prepare Data.rst\n",
      "\n",
      "\n"
     ]
    }
   ],
   "source": [
    "for infile in notebooks:\n",
    "    infile = infile.replace(' ','\\ ')\n",
    "    \n",
    "    #convert notebook in its local directory\n",
    "    path, nbfile = os.path.split(infile)    \n",
    "    ! cd $path; ipython nbconvert --to rst $nbfile\n",
    "\n",
    "    #move the .rst file\n",
    "    no_ext = os.path.splitext(nbfile)[0]\n",
    "    movefiles = path+'/'+no_ext+'.rst'\n",
    "    dest = 'docs/'+'/'.join(path.split('/')[1:]) #pretty dependent on directory structure\n",
    "    ! mv $movefiles $dest\n",
    "\n",
    "    #move supporting files, if there are any\n",
    "    movedir = path+'/'+no_ext+'_files'\n",
    "    if os.path.exists(movedir):\n",
    "        destdir = 'docs/'+'/'.join(path.split('/')[1:])+'/'+no_ext+'_files'        \n",
    "        if os.path.exists(destdir): #check to see if the 'files' directory has already been created\n",
    "            !rm -r $destdir #if so, remove it, so we can have a clean slate...\n",
    "        !mv $movedir $dest\n",
    "        \n",
    "    print '\\n'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python [Root]",
   "language": "python",
   "name": "Python [Root]"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 2
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython2",
   "version": "2.7.12"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 0
}