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thesis_biblio.bib
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thesis_biblio.bib
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% Deep learning review
@article{LeCun2015,
author = {Yann LeCun and Yoshua Bengio and Geoffrey Hinton},
journal = {Nature},
pages = {436--444},
title = {Deep Learning},
volume = {521},
year = {2015}
}
@article{Weigert2018,
author = {Martin Weigert and Uwe Schmidt and Tobias Boothe
and Andreas M\"{u}ller and Alexandr Dibrov and Akanksha Jain
and Benjamin Wilhelm and Deborah Schmidt and Coleman Broaddus
and Si\^{a}n Culley and Mauricio Rocha-Martins and Fabi\'{a}n Segovia-Miranda
and Caren Norden and Ricardo Henriques and Marino Zerial
and Michele Solimena and Jochen Rink and Pavel Tomancak
and Loic Royer and Florian Jug and Eugene W. Myers},
journal = {Nat. Met.},
pages = {1090--1097},
title = {Content-Aware Image Restoration:
Pushing the Limits of Fluorescence Microscopy},
volume = {15},
year = {2018}
}
% CRC Handbook of Chemistry and Physics
@book{CRCHandbook,
editor = {John R. Rumble},
title = {{CRC Handbook of Chemistry and Physics}},
edition = {99th},
year = {2018},
publisher = {CRC Press},
address = {Boca Raton, US}
}
% Unit for laser irradiance
@techreport{ISO9288,
key = {ISO 9288:1989},
year = {1989},
title = {{Thermal insulation -- Heat transfer by radiation -- Physical quantities and definitions}},
address = {Geneva, CH},
institution = {International Organization for Standardization}
}
% Franck-Condon principle
@article{Franck1926,
author = {James Franck and E. G. Dymond},
journal = {Trans. Faraday Soc.},
pages = {536--542},
title = {Elementary Processes of Photochemical Reactions},
volume = {21},
year = {1926}
}
@article{Condon1926,
author = {Edward Condon},
journal = {Phys. Rev.},
pages = {1182--1201},
title = {A Theory of Intensity Distribution in Band Systems},
volume = {28},
year = {1926}
}
% Intro to ultramicrotomy by Leica
@manual{UltramicrotomyManual,
title = {{Brief Introduction to Ultramicrotomy}},
organization = {Leica Microsystems GmbH},
year = {2014}
}
% Coherent manuals
@manual{LegendManual,
title = {{Legend Elite Operator's Manual}},
organization = {Coherent, Inc.},
year = {2010}
}
@manual{MicraManual,
title = {{Micra-5 Laser Operator's Manual}},
organization = {Coherent, Inc.},
year = {2009}
}
@manual{EvolutionManual,
title = {{Evolution-15/30 Laser Operator's Manual}},
organization = {Coherent, Inc.},
year = {2006}
}
% Nobel lectures
@book{Nobel1901,
title = {{Nobel Lectures: Chemistry 1901--1921}},
year = {1966},
publisher = {{Elsevier}},
address = {Amsterdam, NL}
}
@book{Nobel1922,
title = {{Nobel Lectures: Physiology or Medicine 1922--1941}},
year = {1965},
publisher = {{Elsevier}},
address = {Amsterdam, NL}
}
@book{Nobel1942,
title = {{Nobel Lectures: Physics 1942--1962}},
year = {1964},
publisher = {{Elsevier}},
address = {Amsterdam, NL}
}
@book{Nobel1963,
title = {{Nobel Lectures: Physics 1963--1970}},
year = {1998},
publisher = {{World Scientific Publishing}},
address = {Singapore, SG},
editor = {Stig Lundqvist}
}
@book{Nobel1971,
title = {{Nobel Lectures: Physics 1971--1980}},
year = {1992},
publisher = {{World Scientific Publishing}},
address = {Singapore, SG},
editor = {Stig Lundqvist}
}
@book{Nobel1964,
title = {{Nobel Lectures: Chemistry 1942--1962}},
year = {1964},
publisher = {{Elsevier}},
address = {Amsterdam, NL},
}
@book{Nobel1972,
title = {{Nobel Lectures: Chemistry 1963--1970}},
year = {1972},
publisher = {{Elsevier}},
address = {Amsterdam, NL},
}
@book{Nobel1991,
title = {{Nobel Lectures: Chemistry 1991--1995}},
year = {1997},
publisher = {{World Scientific Publishing}},
address = {Singapore, SG},
editor = {Bo G. Malmstr\"{o}m}
}
@book{Nobel1996,
title = {{Nobel Lectures: Chemistry 1996--1980}},
year = {2003},
publisher = {{World Scientific Publishing}},
address = {Singapore, SG},
editor = {Ingmar Grenthe}
}
% Crystallography book
@book{XRDBook,
author = {Andr\'{e} Authier},
title = {{Early Days of X-ray Crystallography}},
year = {2013},
publisher = {Oxford University Press},
address = {Oxford, UK}
}
% Ewald's book
@book{EwaldBook,
editor = {Paul P. Ewald},
title = {{Fifty Years of X-ray Diffraction}},
year = {1962},
publisher = {Springer},
address = {New York, US}
}
% Warren's XRD book
@book{WarrenBook,
author = {Bertram E. Warren},
title = {{X-ray Diffraction}},
year = {1990},
publisher = {Dover Publications},
address = {Mineola, US}
}
% TEM book
@book{CowleyBook,
author = {John M. Cowley},
title = {{Diffraction Physics}},
year = {1995},
edition = {3rd},
publisher = {North Holland},
address = {New York, US}
}
% TEM book
@book{ReimerBook,
author = {Ludwig Reimer and Helmut Kohl},
title = {{Transmission Electron Microscopy: Physics of Image Formation}},
year = {2008},
edition = {5th},
series = {Springer Series in Optical Sciences},
publisher = {Springer},
address = {New York, US}
}
% TEM simulation book
@book{KirklandBook,
author = {Earl J. Kirkland},
title = {{Advanced Computing in Electron Microscopy}},
year = {2010},
edition = {2nd},
publisher = {Springer},
address = {New York, US}
}
% Electron crystallography book
@book{ZouBook,
author = {Xiaodong Zou and Sven Hovm\"{o}ller and Peter Oleynikov},
title = {{Electron Crystallography}},
year = {2011},
publisher = {Oxford University Press},
address = {Oxford, UK}
}
% Cowley + Moodie paper on physical optics for electron scattering
@article{Cowley1957,
author = {J. M. Cowley and A. F. Moodie},
title = {{The Scattering of Electrons by Atoms and Crystals. I. A New Theoretical Approach}},
year = {1957},
pages = {609--619},
journal = {Acta Crystallogr.},
volume = {10}
}
@article{Cowley1959a,
author = {J. M. Cowley and A. F. Moodie},
title = {{The Scattering of Electrons by Atoms and Crystals. II. The Effects of Finite Source Size}},
year = {1959},
pages = {609--619},
journal = {Acta Crystallogr.},
volume = {12}
}
@article{Cowley1959b,
author = {J. M. Cowley and A. F. Moodie},
title = {{The Scattering of Electrons by Atoms and Crystals. III. Single-Crystal Diffraction Patterns}},
year = {1959},
pages = {360--367},
journal = {Acta Crystallogr.},
volume = {12}
}
% Ashcroft solid state book
@book{AshcroftBook,
author = {Neil W. Ashcroft and N. David Mermin},
title = {Solid State Physics},
year = {1976},
publisher = {Holt, Rinehart and Winston},
address = {New York, US}
}
% Townsend QM book
@book{TownsendBook,
author = {John S. Townsend},
title = {A Modern Approach to Quantum Mechanics},
year = {2000},
publisher = {University Science Books},
address = {Sausalito, US}
}
% Boyd nonlinear optics book
@book{BoydBook,
author = {Robert W. Boyd},
title = {{Nonlinear Optics}},
year = {2008},
publisher = {Academic Press},
edition = {3rd},
address = {Burlington, US}
}
% Photochemistry book
@book{TurroBook,
author = {Nicholas J. Turro and V. Ramamurthy and Juan C. Scaiano},
title = {{Principles of Molecular Photochemistry: An Introduction}},
year = {2008},
publisher = {University Science Books},
address = {Sausalito, US}
}
% Statistical mechanics Book
@book{McQuarrieBook,
author = {Donald A. McQuarrie},
title = {{Statistical Mechanics}},
year = {2000},
publisher = {University Science Books},
address = {Sausalito, US}
}
% Quantum mechanics Book
@book{LandauLifshitzBook,
author = {Lev D. Landau and Evgeny M. Lifshitz},
title = {{Quantum Mechanics: Non-Relativistic Theory}},
year = {1965},
volume = {2},
edition = {2nd},
publisher = {Pergamon Press},
address = {Oxford, UK}
}
% Neutron scattering book
@book{SquiresBook,
author = {G. L. Squires},
title = {{Introduction to the Theory of Thermal Neutron Scattering}},
year = {2012},
edition = {3rd},
publisher = {Cambridge University Press},
address = {Cambridge, UK}
}
% Interplanar distance calculation
@article{LiuLiu2017,
author = {Ying Liu and Yue Liu and Michael G. B. Drew},
year = {2017},
pages = {252--301},
title = {{Comparison of Calculations for Interplanar Distances in a Crystal Lattice}},
journal = {Crystallogr. Rev.},
volume = {23}
}
% Debye vs Scherrer
@article{DebyeScherrer2011,
author = {Uwe Holzwarth and Neil Gibson},
journal = {Nat. Nanotech.},
pages = {534},
title = {{The Scherrer Equation Versus the `Debye-Scherrer' Equation}},
volume = {6},
year = {2011}
}
% Waller (DW) obituary
@article{Waller1992,
author = {S. Lundqvist and A. Magn\'{e}li},
journal = {J. Appl. Cryst.},
pages = {463},
title = {Crystallographers},
volume = {25},
year = {1992}
}
% Debye-Waller factors, B-factors, scattering factors
@article{Peng1996,
author = {L.-M. Peng and G. Ren and S. L. Dudarev and M. J. Whelan},
journal = {Acta Crystallogr.},
pages = {456--470},
title = {Debye-Waller Factors and Absorptive Scattering Factors of Elemental Crystals},
volume = {52},
year = {1996}
}
% Parameters for electron scattering factors
@article{Ren1996,
author = {L.-M. Peng and G. Ren and S. L. Dudarev and M. J. Whelan},
journal = {Acta Crystallogr.},
pages = {257--276},
title = {Robust Parameterization of Elastic and Absorptive Electron Atomic Scattering Factors},
volume = {52},
year = {1996}
}
% International table for crystallography Volume C (electron scattering parameters, neutrons, ...)
@book{ITCBookC,
editor = {E. Prince},
title = {{International Tables for Crystallography}},
volume = {C},
year = {2006},
publisher = {Springer}
}
% CRC Handbook
@book{CRCBook,
editor = {John Rumble},
title = {{CRC Handbook of Chemistry and Physics}},
year = {2017},
edition = {98th},
publisher = {CRC Press},
}
% Ultrafast neutrons
@article{UltrafastNeutrons,
author = {C. Zulick and F. Dollar and V. Chvykov and J. Davis and G. Kalinchencko
and A. Maksimchuk and G. M. Petrov and A. Raymond and A. G. R. Thomas
and L. Willingale and V. Yanovsky and K. Krushelnick},
journal = {Appl. Phys. Lett.},
pages = {124101},
title = {{Energetic Neutrons Beams Generated from Femtosecond Laser Plasma Interactions}},
volume = {102},
year = {2013}
}
% XFEL details
@article{XFEL2017,
author = {Philip Ball},
title = {{Europe's X-ray Laser Fires Up}},
journal = {Nature},
pages = {507--508},
volume = {548},
year = {2017}
}
@article{XFEL2016,
author = {Edwin Cartlidge},
title = {{European XFEL to Shine as Brightest, Fastest X-ray Source}},
journal = {Science},
pages = {22-23},
volume = {354},
year = {2016}
}
% LCLS details
@article{LCLS,
author = {P. Emma and R. Akre and J. Arthur and R. Bionta and C. Bostedt
and J. Bozek and A. Brachmann and P. Bucksbaum and R. Coffee and F.-J. Decker
and Y. Ding and D. Dowell and S. Edstrom and A. Fisher and J. Frisch
and S. Gilevich and J. Hastings and G. Hays and Ph. Hering and Z. Huang
and R. Iverson and H. Loos and M. Messerschmidt and A. Miahnahri
and S. Moeller and H.-D. Nuhn and G. Pile and D. Ratner and J. Rzepiela
and D. Schultz and T. Smith and P. Stefan and H. Tompkins and J. Turner
and J. Welch and W. White and J. Wu and G. Yocky and J. Galayda},
title = {{First Lasing and Operation of an \AA{}ngstrom-Wavelength Free-Electron Laser}},
journal = {Nature Photonics},
pages = {641--647},
volume = {4},
year = {2010}
}
% SACLA details
@article{SACLA,
author = {Makina Yabashi and Hitoshi Tanaka and Tetsuya Ishikawa},
journal = {J. Synchrotron Radiat.},
pages = {477--484},
title = {{Overview of the SACLA Facility}},
volume = {22},
year = {2015}
}
% PAL-XFEL details
@article{PAL-XFEL,
author = {In~Soo Ko and Heung-Sik Kang and Hoon Heo
and Changbum Kim and Gyujin Kim and Chang-Ki Min
and Haeryong Yang and Soung~Youl Baek and Hyo-Jin Choi
and Geonyeong Mun and Byoung~Ryul Park and Young~Jin Suh
and Dong~Cheol Shin and Jinyul Hu and Juho Hong and Seonghoon Jung
and Sang-Hee Kim and KwangHoon Kim and Donghyun Na
and Soung Soo Park and Yong~Jung Park and Young~Gyu Jung
and Seong~Hun Jeong and Hong~Gi Lee and Sangbong Lee
and Sojeong Lee and Bonggi Oh and Hyung~Suck Suh
and Jang-Hui Han and Min~Ho Kim and Nam-Suk Jung
and Young-Chan Kim and Mong-Soo Lee and Bong-Ho Lee
and Chi-Won Sung and Ik-Su Mok and Jung-Moo Yang
and Yong~Woon Parc and Woul-Woo Lee and Chae-Soon Lee
and Hocheol Shin and Ji~Hwa Kim and Yongsam Kim and Jae~Hyuk Lee
and Sang-Youn Park and Jangwoo Kim and Jaeku Park and Intae Eom
and Seungyu Rah and Sunam Kim and Ki~Hyun Nam and Jaehyun Park
and Jaehun Park and Sangsoo Kim and Soonnam Kwon and Ran An
and Sang Han Park and Kyung~Sook Kim and Hyojung Hyun
and Seung~Nam Kim and Seonghan Kim and Chung-Jong Yu
and Bong-Soo Kim and Tai-Hee Kang and Kwang-Woo Kim
and Seung-Hwan Kim and Hee-Seock Lee and Heung-Soo Lee
and Ki-Hyeon Park and Tae-Yeong Koo and Dong-Eon Kim and Ki~Bong Lee},
journal = {Appl. Sci.},
pages = {479},
title = {{Construction and Commissioning of PAL-XFEL Facility}},
volume = {7},
year = {2017}
}
@article{PAL-XFELb,
author = {Kyuseok Yun and Sungwon Kim and Dongjin Kim and Myungwoo Chung
and Wonhyuk Jo and Hyerim Hwang and Daewoong Nam and Sangsoo Kim
and Jangwoo Kim and Sang-Youn Park and Kyung Sook Kim
and Changyong Song and Sooheyong Lee and Hyunjung Kim},
journal = {Sci. Rep.},
pages = {3300},
title = {{Coherence and Pulse Duration Characterization of the PAL-XFEL
in the Hard X-ray Regime}},
volume = {9},
year = {2019}
}
% SwissFEL
@article{SwissFEL,
author = {Christopher J. Milne and Thomas Schietinger and Masamitsu Aiba
and Arturo Alarcon and J\"{u}rgen Alex and Alexander Anghel
and Vladimir Arsov and Carl Beard and Paul Beaud
and Simona Bettoni and Markus Bopp and Helge Brands
and Manuel Br\"{o}nnimann and Ingo Brunnenkant and Marco Calvi
and Alessandro Citterio and Paolo Craievich and Marta Csatari Divall
and Mark D\"{a}llenbach and Michael D’Amico and Andreas Dax
and Yunpei Deng and Alexander Dietrich and Roberto Dinapoli
and Edwin Divall and Sladana Dordevic and Simon Ebner
and Christian Erny and Hansrudolf Fitze and Uwe Flechsig
and Rolf Follath and Franziska Frei and Florian G\"{a}rtner
and Romain Ganter and Terence Garvey and Zheqiao Geng
and Ishkhan Gorgisyan and Christopher Gough and Andreas Hauff
and Christoph P. Hauri and Nicole Hiller and Tadej Humar
and Stephan Hunziker and Gerhard Ingold and Rasmus Ischebeck
and Markus Janousch and Pavle Jurani\'{c} and Mario Jurcevic
and Maik Kaiser and Babak Kalantari and Roger Kalt and Boris Keil
and Christoph Kittel and Gregor Knopp and Waldemar Koprek
and Henrik T. Lemke and Thomas Lippuner and Daniel Llorente Sancho
and Florian L\"{o}hl and Carlos Lopez-Cuenca and Fabian Märki
and Fabio Marcellini and Goran Marinkovic and Isabelle Martiel
and Ralf Menzel and Aldo Mozzanica and Karol Nass and Gian Luca Orlandi
and Cigdem Ozkan~Loch and Ezequiel Panepucci and Martin Paraliev
and Bruce Patterson and Bill Pedrini and Marco Pedrozzi and Patrick Pollet
and Claude Pradervand and Eduard Prat and Peter Radi and Jean-Yves Raguin
and Sophie Redford and Jens Rehanek and Julien R\'{e}hault and Sven Reiche
and Matthias Ringele and Jochen Rittmann and Leonid Rivkin
and Albert Romann and Marie Ruat and Christian Ruder and Leonardo Sala
and Lionel Schebacher and Thomas Schilcher and Volker Schlott
and Thomas Schmidt and Bernd Schmitt and Xintian Shi and Markus Stadler
and Lukas Stingelin and Werner Sturzenegger and Jakub Szlachetko
and Dhanya Thattil and Daniel M. Treyer and Alexandre Trisorio
and Wolfgang Tron and Seraphin Vetter and Carlo Vicario and Didier Voulot
and Meitian Wang and Thierry Zamofing and Christof Zellweger
and Riccardo Zennaro and Elke Zimoch and Rafael Abela
and Luc Patthey and Hans-Heinrich Braun},
journal = {Appl. Sci.},
pages = {720},
title = {{SwissFEL: The Swiss X-ray Free Electron Laser}},
volume = {7},
year = {2017}
}
% Shanghai XFEL
@article{SHINE,
author = {Z. Y. Zhu and Z. T. Zhao and D. Wang and Z. Liu
and R. X. Li and L. X. Yin and Z. H. Yang},
booktitle = {Proceedings of the 38th International Free Electron Laser Conference},
address = {Santa~Fe, US},
year = {2017},
pages = {182--184},
title = {{SCLF: An 8-GeV CW SCRF Linac-Based X-ray FEL Facility in Shanghai}},
editor = {Kip Bishofberger},
publisher = {JACoW Publishing}
}
% Mott-Bethe formula
@article{Mott1930,
author = {Nevill F. Mott},
journal = {Proc. R. Soc. London Ser. A},
volume = {127},
pages = {658--665},
year = {1930},
title = {{The Scattering of Electrons by Atoms}}
}
@article{Bethe1930,
author = {Hans A. Bethe},
journal = {Ann. Phys.},
volume = {5},
pages = {325--400},
year = {1930},
title = {{Zur Theorie des Durchgangs schneller Korpuskularstrahlen durch Materie}}
}
% XFEL radiation damage ?????????????
@article{Suga2016,
author = {Michihiro Suga and Fusamichi Akita and Kunio Hirata and Go Ueno and Hironori Murakami and Yoshiki Nakajima and Tetsuya Shimizu and Keitaro Yamashita and Masaki Yamamoto and Hideo Ago and Jian-Ren Shen},
title = {{Native Structure of Photosystem II at 1.95~\AA Resolution Viewed by Femtosecond X-ray Pulses}},
volume = {517},
pages = {99--103},
year = {2015},
journal = {Nature}
}
% Electron damage threshold
@article{Stenn1970,
author = {{K. Stenn and G. R. Bahr}},
title = {{Specimen Damage Caused by the Beam of the Transmission Electron Microscope, a Correlative Reconsideration}},
pages = {526--550},
year = {1970},
volume = {31},
journal = {{J. Ultrastruct. Res.}}
}
% Electron vs X-ray damage threshold
@article{Henderson1990,
author = {{Richard Henderson}},
title = {{Cryo-Protection of Protein Crystals Against Radiation Damage in Electron and X-ray Diffraction}},
pages = {6--8},
year = {1990},
journal = {Proc. R. Soc. Lond. B}
}
@article{Henderson1995,
author = {{Richard Henderson}},
title = {{The Potential and Limitations of Neutrons, Electrons and X-rays for Atomic Resolution Microscopy of Unstained Biological Molecules}},
pages = {171--193},
year = {1995},
volume = {28},
journal = {Q. Rev. Biophys.}
}
@article{Henderson2002,
author = {Richard Henderson},
journal = {Nature},
title = {{Excitement Over X-ray Lasers is Excessive}},
volume = {415},
pages = {833},
year = {2002}
}
@article{Spence2017,
author = {John C. H. Spence},
journal = {Struct. Dyn.},
title = {{Outrunning Damage: Electrons vs X-rays --- Timescales and Mechanisms}},
volume = {4},
pages = {044027},
year = {2017}
}
% Electron vs X-rays
@article{Clabbers2018,
author = {Max T. B. Clabbers and Jan Pieter Abrahams},
journal = {Crystallogr. Rev.},
title = {{Electron Crystallography and Three-Dimensional Crystallography
for Structural Biology}},
volume = {24},
pages = {176--204},
year = {2018}
}
% First proposal for "diffraction before destruction"
@article{Hadju2000,
author = {Richard Neutze and Remco Wouts
and David van der Spoel and Edgar Weckert and Janos Hadju},
title = {{Potential for Biomolecular Imaging with Femtosecond X-ray Pulses}},
pages = {752--757},
year = {2000},
volume = {406},
journal = {Nature}
}
% First diffract-destroy experiments
@article{Chapman2007,
author = {Henry N. Chapman and Stefan P. Hau-Riege
and Michael J. Bogan and Saša Bajt and Anton Barty
and Sébastien Boutet and Stefano Marchesini
and Matthias Frank and Bruce W. Woods and W. Henry Benner
and Richard A. London and Urs Rohner and Abraham Szöke
and Eberhard Spiller and Thomas Möller and Christoph Bostedt
and David A. Shapiro and Marion Kuhlmann and Rolf Treusch
and Elke Plönjes and Florian Burmeister and Magnus Bergh
and Carl Caleman and Gösta Huldt and M. Marvin Seibert and Janos Hajdu},
title = {{Femtosecond Time-Delay X-ray Holography}},
pages = {676--679},
year = {2007},
volume = {448},
journal = {Nature}
}
@article{Chapman2011,
author = {Henry N. Chapman and Petra Fromme and Anton Barty
and Thomas A. White and Richard A. Kirian and Andrew Aquila
and Mark S. Hunter and Joachim Schulz and Daniel P. DePonte
and Uwe Weierstall and R. Bruce Doak and Filipe R. N. C. Maia
and Andrew V. Martin and Ilme Schlichting and Lukas Lomb
and Nicola Coppola and Robert L. Shoeman and Sascha W. Epp
and Robert Hartmann and Daniel Rolles and Artem Rudenko
and Lutz Foucar and Nils Kimmel and Georg Weidenspointner
and Peter Holl and Mengning Liang and Miriam Barthelmess
and Carl Caleman and Sébastien Boutet and Michael J. Bogan
and Jacek Krzywinski and Christoph Bostedt and Saša Bajt
and Lars Gumprecht and Benedikt Rudek and Benjamin Erk
and Carlo Schmidt and André Hömke and Christian Reich
and Daniel Pietschner and Lothar Strüder and Günter Hauser
and Hubert Gorke and Joachim Ullrich and Sven Herrmann
and Gerhard Schaller and Florian Schopper and Heike Soltau
and Kai-Uwe Kühnel and Marc Messerschmidt and John D. Bozek
and Stefan P. Hau-Riege and Matthias Frank and Christina Y. Hampton
and Raymond G. Sierra and Dmitri Starodub and Garth J. Williams
and Janos Hajdu and Nicusor Timneanu and M. Marvin Seibert
and Jakob Andreasson and Andrea Rocker and Olof Jönsson
and Martin Svenda and Stephan Stern and Karol Nass and Robert Andritschke
and Claus-Dieter Schröter and Faton Krasniqi and Mario Bott
and Kevin E. Schmidt and Xiaoyu Wang and Ingo Grotjohann
and James M. Holton and Thomas R. M. Barends and Richard Neutze
and Stefano Marchesini and Raimund Fromme and Sebastian Schorb
and Daniela Rupp and Marcus Adolph and Tais Gorkhover
and Inger Andersson and Helmut Hirsemann and Guillaume Potdevin
and Heinz Graafsma and Björn Nilsson and John C. H. Spence},
title = {{Femtosecond X-ray Protein Nanocrystallography}},
pages = {73--77},
year = {2011},
volume = {470},
journal = {Nature}
}
@article{Hadju2011,
author = {M. Marvin Seibert and Tomas Ekeberg and Filipe R. N. C. Maia
and Martin Svenda and Jakob Andreasson and Olof Jönsson and Duško Odić
and Bianca Iwan and Andrea Rocker and Daniel Westphal and Max Hantke
and Daniel P. DePonte and Anton Barty and Joachim Schulz and Lars Gumprecht
and Nicola Coppola and Andrew Aquila and Mengning Liang and Thomas A. White
and Andrew Martin and Carl Caleman and Stephan Stern and Chantal Abergel
and Virginie Seltzer and Jean-Michel Claverie and Christoph Bostedt
and John D. Bozek and Sébastien Boutet and A. Alan Miahnahri
and Marc Messerschmidt and Jacek Krzywinski and Garth Williams
and Keith O. Hodgson and Michael J. Bogan and Christina Y. Hampton
and Raymond G. Sierra and Dmitri Starodub and Inger Andersson and Saša Bajt
and Miriam Barthelmess and John C. H. Spence and Petra Fromme
and Uwe Weierstall and Richard Kirian and Mark Hunter and R. Bruce Doak
and Stefano Marchesini and Stefan P. Hau-Riege and Matthias Frank
and Robert L. Shoeman and Lukas Lomb and Sascha W. Epp and Robert Hartmann
and Daniel Rolles and Artem Rudenko and Carlo Schmidt and Lutz Foucar
and Nils Kimmel and Peter Holl and Benedikt Rudek and Benjamin Erk
and André Hömke and Christian Reich and Daniel Pietschner
and Georg Weidenspointner and Lothar Strüder and Günter Hauser
and Hubert Gorke and Joachim Ullrich and Ilme Schlichting and Sven Herrmann
and Gerhard Schaller and Florian Schopper and Heike Soltau and Kai-Uwe Kühnel
and Robert Andritschke and Claus-Dieter Schröter and Faton Krasniqi
and Mario Bott and Sebastian Schorb and Daniela Rupp and Marcus Adolph
and Tais Gorkhover and Helmut Hirsemann and Guillaume Potdevin
and Heinz Graafsma and Björn Nilsson and Henry N. Chapman and Janos Hajdu},
title = {{Single Mimivirus Particles Intercepted and Imaged with an X-ray Laser}},
pages = {78-81},
year = {2011},
volume = {470},
journal = {Nature}
}
% George Green biography
@article{GreenWhy,
title = {{Why did George Green Write his Essay of 1828 on Electricity and Magnetism?}},
journal = {{Am. Math. Mon.}},
volume = {102},
year = {1995},
author = {{I. Grattan-Guinness}},
pages = {387--396}
}
@article{GreenBio,
title = {{George Green: An Enigmatic Mathematician}},
journal = {{Am. Math. Mon.}},
volume = {106},
year = {1999},
author = {{D. M. Cannell}},
pages = {136--151}
}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Time scale of transitions
@article{Jaffe1966,
author = {Hans H. Jaff\'{e} and Albert L. Miller},
journal = {J. Chem. Educ.},
pages = {469--473},
title = {{The Fates of Electronic Excitation Energy}},
volume = {43},
year = {1966}
}
% Cross-phase modulation reference
@article{Islam1987,
author = {M. N. Islam and L. F. Mollenauer and R. H. Stolen and J. R. Simpson and H. T. Shang},
journal = {Opt. Lett.},
pages = {625--627},
title = {{Cross-Phase Modulation in Optical Fibers}},
volume = {12},
year = {1987}
}
% IRF reference
@article{Megerle2009,
author = {U. Megerle and I. Pugliesi and C. Schriever and C. F. Sailer and E. Riedle},
journal = {Appl. Phys. B},
pages = {215--231},
title = {{Sub-50 fs Broadband Absorption Spectroscopy with Tunable Excitation:
Putting the Analysis of Ultrafast Molecular Dynamics on Solid Ground}},
volume = {96},
year = {2009}
}
% AOPS/AOM reference
@article{Dugan1997,
author = {M. A. Dugan and J. X. Tull and W. S. Warren},
journal = {J. Opt. Soc. Am. B},
pages = {2348--2358},
title = {{High-Resolution Acousto-Optic Shaping of Unamplified
and Amplified Femtosecond Laser Pulses}},
volume = {14},
year = {1997}
}
% FROG reference
@book{Trebino2000,
editor = {R. Trebino},
title = {{Frequency Resolved Optical Gating: The Measurement of Ultrashort Laser Pulses}},
year = {2000},
publisher = {Springer US},
address = {New York, US}
}
% WLG reference
@article{Alfano1970,
author = {R. R. Alfano and S. L. Shapiro},
journal = {Phys. Rev. Lett.},
pages = {584--587},
title = {{Emission in the Region 4000 to 7000 \AA{} via Four-Photon Coupling in Glass}},
volume = {24},
year = {1970}
}
@article{Nagura2002,
author = {C. Nagura and A. Suda and H. Kawana and M. Obara and K. Midorikawa},
journal = {Appl. Opt.},
pages = {3735--3742},
title = {{Generation and Characterization of Ultrafast White-Light Continuum in Condensed Media}},
volume = {41},
year = {2002}
}
% GA, SVD references
@article{Nagle1991,
author = {J. F. Nagle},
journal = {Biophys. J.},
pages = {476--487},
title = {{Solving Complex Photocycle Kinetics. Theory and Direct Method}},
volume = {59},
year = {1991}
}
@article{Grondelle2004,
author = {I. H. M. van Stokkum and D. S. Larsen and R. van Grondelle},
journal = {Biochim. Biophys. Acta},
pages = {82--104},
title = {{Global and Target Analysis of Time-Resolved Spectra}},
volume = {1657},
year = {2004}
}
@article{Wilderen2011,
author = {Luuk J. G. W. van Wilderen and Craig N. Lincoln and Jasper J. van Thor},
journal = {PLoS One},
pages = {e17373},
title = {{Modelling Multi-Pulse Population Dynamics from Ultrafast Spectroscopy}},
volume = {6},
year = {2011}
}
@article{Ruckebusch2012,
author = {C. Ruckebusch and M. Sliwa and P. Pernot and A. de Juan and R. Tauler},
journal = {J. Photoch. Photobio. C},
pages = {1--27},
title = {{Comprehensive Data Analysis of Femtosecond Transient Absorption Spectra: A Review}},
volume = {13},
year = {2012}
}
% Theses
@phdthesis{Ryan-thesis,
author = {Ryan L. Field},
title = {{Photoinduced Spin Crossover in Single Crystal [Fe\textsuperscript{II}(bpy)\textsubscript{3}](PF\textsubscript{6})\textsubscript{2}}},
school = {University of Toronto},
year = {2016}
}
@phdthesis{Hubert-thesis,
author = {Hubert Jean-Ruel},
title = {{Femtosecond Electron Diffraction and Spectroscopic Studies of a Solid State Organic Chemical Reaction}},
school = {University of Toronto},
year = {2014}
}
@phdthesis{Ray-thesis,
author = {Meng Gao},
title = {{Mapping Organic Molecular Motions with RF Compressed Femtosecond Electron Diffraction}},
school = {University of Toronto},
year = {2014}
}
@phdthesis{Yifeng-thesis,
author = {Yifeng Jiang},
title = {{Femtosecond Electron Diffraction Studies of Photoinduced Spin Crossover in Single Crystal [Fe(PM-AzA)\textsubscript{2}](NCS)\textsubscript{2}}},
school = {Universit\"{a}t Hamburg},
year = {2016}
}
@phdthesis{Maher-thesis,
author = {Maher Harb},
title = {{Investigating Photoinduced Structural Changes in Si Using Femtosecond Electron Diffraction}},
school = {University of Toronto},
year = {2009}
}
@phdthesis{AnnaSipe-thesis,
author = {Anna M. Michalik},
title = {{Theory of Ultrafast Electron Diffraction}},
school = {University of Toronto},
year = {2009}
}
% DC-RF UED characterization
@article{Gao2012,
author = {M. Gao and H. Jean-Ruel and R. R. Cooney and J. Stampe
and M. de~Jong and M. Harb and G. Sciaini and G. Moriena
and R. J. D. Miller},
journal = {Opt. Express},
pages = {12048--12058},
title = {{Full Characterization of RF Compressed Femtosecond Electron Pulses using Ponderomotive Scattering}},
volume = {20},
year = {2012}
}S
% TA-DAL
@article{Jean-Ruel2011,
author = {Hubert Jean-Ruel and Ryan R. Cooney and Meng Gao
and Cheng Lu and Michal A. Kochman and Carole A. Morrison
and R. J. Dwayne Miller},
journal = {J. Phys. Chem. A},
pages = {13158--13168},
title = {{Femtosecond Dynamics of the Ring Closing Process of Diarylethene:
A Case Study of Electrocyclic Reactions in Photochromic Single Crystals}},
volume = {115},
year = {2011}
}
% UED-EDOPF6
@article{Gao2013,
author = {Meng Gao and Cheng Lu and Hubert Jean-Ruel
and LaiChung Liu and Alexander Marx and Ken Onda
and Shin-Ya Koshihara and Yoshiaki Nakano and Xiangfeng Shao
and Takaaki Hiramatsu and Gunzi Saito and Hideki Yamochi
and Ryan R. Cooney and Gustavo Moriena and Germ{\'{a}}n Sciaini
and R. J. Dwayne Miller},
journal = {Nature},
pages = {343--346},
title = {{Mapping Molecular Motions Leading to Charge Delocalization with Ultrabright Electrons}},
volume = {496},
year = {2013}
}
@article{Gao2013b,
author = {Meng Gao and Yifeng Jiang and G\"{u}unther H. Kassier
and R. J. Dwayne Miller},
journal = {Appl. Phys. Lett.},
pages = {033503},
title = {{Single Shot Time Stamping of Ultrabright Radio Frequency Compressed Electron Pulses}},
volume = {103},
year = {2013}
}
% UED-DAL
@article{Jean-Ruel2013,
author = {Hubert Jean-Ruel and Meng Gao
and Michal A. Kochman and Cheng Lu
and LaiChung Liu and Ryan R. Cooney
and Carole A. Morrison and R. J. Dwayne Miller},
journal = {J. Phys. Chem. B},
pages = {15894--15902},
title = {{Ring-Closing Reaction in Diarylethene Captured
by Femtosecond Electron Crystallography}},
volume = {117},
year = {2013}
}
% REGAE
@article{Manz2015,
author = {Manz, Stephanie and Casandruc, Albert
and Zhang, Dongfang and Zhong, Yinpeng
and Loch, Rolf A. and Marx, Alexander
and Hasegawa, Taisuke and Liu, LaiChung
and Bayesteh, Shima and Delsim-Hashemi, Hossein
and Hoffmann, Matthias C. and Felber, Matthias
and Hachmann, Max and Mayet, Frank and Hirscht, Julian
and Keskin, Sercan and Hada, Masaki and Epp, Sascha W.
and Fl\"{o}ttmann, Klaus and Miller, R. J. Dwayne},
journal = {Faraday Discuss.},
pages = {467--491},
title = {{Mapping Atomic Motions with Ultrabright Electrons:
Towards Fundamental Limits in Space-Time Resolution}},
volume = {177},
year = {2015}
}
% TA-BPY
@article{Field2016,
author = {Ryan L. Field and LaiChung Liu
and Wojciech Gawelda and Cheng Lu and R. J. Dwayne Miller},
journal = {Chem. Eur. J.},
pages = {5118--5122},
title = {{Spectral Signatures of Ultrafast Spin Crossover in Single Crystal
[Fe\textsuperscript{II}(bpy)\textsubscript{3}](PF\textsubscript{6})\textsubscript{2}}},
volume = {22},
year = {2016}
}
% UED-AZA
@article{Jiang2017,
author = {Yifeng Jiang and LaiChung Liu
and Henrike M. M\"{u}ller-Werkmeister
and Cheng Lu and Dongfang Zhang and Ryan L. Field
and Antoine Sarracini and Gustavo Moriena
and Eric Collet and R. J. Dwayne Miller},
journal = {Angew. Chem. Int. Ed.},
pages = {7130--7134},
title = {{Structural Dynamics upon Photoexcitation in a Spin Crossover Crystal
Probed with Femtosecond Electron Diffraction}},
volume = {56},
year = {2017}
}
% UED-AZA
@article{Jiang2019,
author = {Yifeng Jiang and LaiChung Liu
and Kamil M. Krawczyk and Antoine Sarracini
and Jordan S. Wentzell and Cheng Lu and Ryan L. Field
and Samir F. Matar and Wojciech Gawelda
and Henrike M. M\"{u}ller-Werkmeister and R. J. Dwayne Miller},
title = {{Direct Observation of Nuclear Reorganization Driven
by Ultrafast Spin Transitions}},
year = {2019},
note = {(under consideration)}
}
% UED-EDOSbF6
@article{Liu2017,