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15-HiC.Rmd
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15-HiC.Rmd
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# HiC {#HiC}
## Introduction to Chromatin Interaction and Organization
<iframe width="560" height="315" src="https://www.youtube.com/embed/ddyWbxjkhos" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Methods to Investigate 3D Genome Organization
<iframe width="560" height="315" src="https://www.youtube.com/embed/qQIlqTTTLcA" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Topologically Associating Domains
<iframe width="560" height="315" src="https://www.youtube.com/embed/ytVxgHG5REg" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## TAD Function and Loop Anchors
<iframe width="560" height="315" src="https://www.youtube.com/embed/Lgu4HHDpqOI" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Chromatin Compartments
<iframe width="560" height="315" src="https://www.youtube.com/embed/odA3uAMx1pA" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Computational Methods to Call Chromatin Loops
<iframe width="560" height="315" src="https://www.youtube.com/embed/is8RwBGl1r4" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Variations of Chromatin Interaction Technologies
<iframe width="560" height="315" src="https://www.youtube.com/embed/LNq5fcFhaLk" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Resources for Exploring 3D Genomes
<iframe width="560" height="315" src="https://www.youtube.com/embed/Q3-8R1gs-eU" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Lab 7
### BS-seq and Bismark Tutorial
<iframe width="560" height="315" src="https://www.youtube.com/embed/pdHndKaGzJ4" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
### Tutorial on Associating DNA Methylation with Expression
<iframe width="560" height="315" src="https://www.youtube.com/embed/Es_uDJ2yhOA" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
### HiC Analysis Tutorial
<iframe width="560" height="315" src="https://www.youtube.com/embed/4ZqPaGkn7hM" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>