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Software dev
Anusri Pampari edited this page Jul 3, 2023
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- Preprocessing wrapper to start from bam and auto-generate non-peaks and peaks - https://github.com/kundajelab/chrombpnet/issues/89
- Multi-task training - https://github.com/kundajelab/chrombpnet/issues/108
- Add support for bed3 format while making prediction bigwigs - https://github.com/kundajelab/chrombpnet/issues/118. To add support for the following (1) Merge the input bed file (2) Make overlapping windows for the merged bed file using bedtools makewindows. (window size 1000bp and overlapping by at least 250bp) (3) Create summits centered on the center of the windows to make predictions.