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quarto-reporting.html
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<!DOCTYPE html>
<html lang="en"><head>
<script src="quarto-reporting_files/libs/clipboard/clipboard.min.js"></script>
<script src="quarto-reporting_files/libs/quarto-html/tabby.min.js"></script>
<script src="quarto-reporting_files/libs/quarto-html/popper.min.js"></script>
<script src="quarto-reporting_files/libs/quarto-html/tippy.umd.min.js"></script>
<link href="quarto-reporting_files/libs/quarto-html/tippy.css" rel="stylesheet">
<link href="quarto-reporting_files/libs/quarto-html/quarto-html.min.css" rel="stylesheet" data-mode="light">
<link href="quarto-reporting_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles"><meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta name="generator" content="quarto-1.2.99">
<meta name="author" content="Tom Mock">
<title>Beautiful Reports and Presentations with Quarto</title>
<meta name="apple-mobile-web-app-capable" content="yes">
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no, minimal-ui">
<link rel="stylesheet" href="quarto-reporting_files/libs/revealjs/dist/reset.css">
<link rel="stylesheet" href="quarto-reporting_files/libs/revealjs/dist/reveal.css">
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
div.columns{display: flex; gap: min(4vw, 1.5em);}
div.column{flex: auto; overflow-x: auto;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
ul.task-list li input[type="checkbox"] {
width: 0.8em;
margin: 0 0.8em 0.2em -1.6em;
vertical-align: middle;
}
pre > code.sourceCode { white-space: pre; position: relative; }
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code.sourceCode > span { color: inherit; text-decoration: inherit; }
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pre.numberSource code > span > a:first-child::before
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padding: 0 4px; width: 4em;
color: #aaaaaa;
}
pre.numberSource { margin-left: 3em; border-left: 1px solid #aaaaaa; padding-left: 4px; }
div.sourceCode
{ color: #003b4f; background-color: #f1f3f5; }
@media screen {
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}
code span { color: #003b4f; } /* Normal */
code span.al { color: #ad0000; } /* Alert */
code span.an { color: #5e5e5e; } /* Annotation */
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code span.co { color: #5e5e5e; } /* Comment */
code span.cv { color: #5e5e5e; font-style: italic; } /* CommentVar */
code span.do { color: #5e5e5e; font-style: italic; } /* Documentation */
code span.dt { color: #ad0000; } /* DataType */
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code span.wa { color: #5e5e5e; font-style: italic; } /* Warning */
</style>
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<link href="quarto-reporting_files/libs/revealjs/plugin/quarto-support/footer.css" rel="stylesheet">
<style type="text/css">
.callout {
margin-top: 1em;
margin-bottom: 1em;
border-radius: .25rem;
}
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padding: 0em 0.5em;
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border-top: solid 1px silver;
border-bottom: solid 1px silver;
display: flex;
}
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border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
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flex-grow: 1;
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font-size: .9rem;
font-weight: 600;
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font-weight: 600;
opacity: 85%;
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width: 0.9rem;
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content: "";
background-repeat: no-repeat;
background-size: 0.9rem 0.9rem;
}
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}
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margin-top: 1rem;
padding-right: .5rem;
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margin-top: .5rem;
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margin-top: 1rem;
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/* Callout Types */
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div.callout-note.callout-style-default .callout-caption {
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}
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<div class="slides">
<section id="title-slide" data-background-color="#447099" class="center"><h1 class="title">Beautiful Reports and Presentations<br>with Quarto</h1>
<p class="author">Tom Mock</p>
<p class="date">9/27/22</p>
</section><section id="quarto---visual-editor" class="slide level2"><h2>Quarto - Visual Editor</h2>
<p><img data-src="https://quarto.org/docs/visual-editor/images/visual-editing-toolbar.png" alt="A snippet of an RStudio window showing the options bar at the top of an RMarkdown document."></p>
<table>
<colgroup>
<col style="width: 33%">
<col style="width: 33%">
<col style="width: 32%">
</colgroup>
<thead><tr class="header">
<th>Format</th>
<th>Insert</th>
<th>Table</th>
</tr></thead>
<tbody><tr class="odd">
<td><img data-src="https://quarto.org/docs/visual-editor/images/visual-editing-format-menu.png" alt="The contents of the Format drop down menu."></td>
<td><img data-src="https://quarto.org/docs/visual-editor/images/visual-editing-insert-menu.png" data-fig0alt="The contents of the Insert drop down menu."></td>
<td><img data-src="https://quarto.org/docs/visual-editor/images/visual-editing-table-menu.png" alt="The contents of the Table drop down menu."></td>
</tr></tbody>
</table></section><section id="static-documents" class="slide level2"><h2>Static documents</h2>
<ul>
<li>A static document is your “daily driver” - has the power for a complex table of contents, figure alignment, control of ouptut/code, and other niceties</li>
<li>Useful as a lab notebook, scratchpad, or the final output for your team</li>
<li>Most powerful as the combination of written thoughts and observations along with source code</li>
</ul></section><section id="parameters" class="slide level2"><h2>Parameters</h2>
<p>You may have a set of parameters that are used to create different variations of a report. For example:</p>
<ul>
<li>Showing results for a specific geographic location.</li>
<li>Running a report that covers a specific time period.</li>
<li>Running a single analysis multiple times for different assumptions.</li>
</ul></section><section id="parameters-1" class="slide level2"><h2>Parameters</h2>
<div class="columns">
<div class="column fragment" style="width:45%;">
<p><strong>Python</strong> - Papermill style<br></p>
<div class="sourceCode" id="cb1"><pre class="sourceCode numberSource {{python}} number-lines code-with-copy"><code class="sourceCode"><span id="cb1-1"><a href="#cb1-1"></a>#| tags: [parameters]</span>
<span id="cb1-2"><a href="#cb1-2"></a></span>
<span id="cb1-3"><a href="#cb1-3"></a>alpha = 0.1</span>
<span id="cb1-4"><a href="#cb1-4"></a>ratio = 0.1</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="column fragment" style="width:40%;">
<p><br></p>
<div class="sourceCode" id="cb2"><pre class="sourceCode numberSource {{python}} number-lines code-with-copy"><code class="sourceCode"><span id="cb2-1"><a href="#cb2-1"></a>str(alpha)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
<div class="fragment">
<div class="columns">
<div class="column" style="width:45%;">
<p><strong>R</strong> - YAML style<br></p>
<pre><code>---
title: "My Document"
params:
alpha: 0.1
ratio: 0.1
---</code></pre>
</div>
<div class="column fragment" style="width:40%;">
<p><br></p>
<div class="sourceCode" id="cb4"><pre class="sourceCode numberSource {{r}} number-lines code-with-copy"><code class="sourceCode"><span id="cb4-1"><a href="#cb4-1"></a>str(params$alpha)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
</div>
<div class="fragment">
<p><strong>CLI/Terminal</strong></p>
<div class="sourceCode" id="cb5"><pre class="sourceCode numberSource bash number-lines code-with-copy"><code class="sourceCode bash"><span id="cb5-1"><a href="#cb5-1"></a><span class="ex">quarto</span> render doc.qmd <span class="at">-P</span> alpha:0.2 <span class="at">-P</span> ratio:0.3</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="render-with-parameters" class="slide level2"><h2>Render with Parameters</h2>
<div class="columns">
<div class="column fragment" style="width:52%;">
<div class="sourceCode" id="cb6"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb6-1"><a href="#cb6-1"></a><span class="pp">---</span></span>
<span id="cb6-2"><a href="#cb6-2"></a><span class="fu">title</span><span class="kw">:</span><span class="at"> </span><span class="st">"Penguins"</span></span>
<span id="cb6-3"><a href="#cb6-3"></a><span class="fu">date</span><span class="kw">:</span><span class="at"> today</span></span>
<span id="cb6-4"><a href="#cb6-4"></a><span class="fu">format</span><span class="kw">:</span><span class="at"> html</span></span>
<span id="cb6-5"><a href="#cb6-5"></a><span class="fu">params</span><span class="kw">:</span></span>
<span id="cb6-6"><a href="#cb6-6"></a><span class="at"> </span><span class="fu">species</span><span class="kw">:</span><span class="at"> Adelie</span></span>
<span id="cb6-7"><a href="#cb6-7"></a><span class="pp">---</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="sourceCode" id="cb7"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb7-1"><a href="#cb7-1"></a><span class="in">```{r}</span></span>
<span id="cb7-2"><a href="#cb7-2"></a><span class="co">#| label: setup</span></span>
<span id="cb7-3"><a href="#cb7-3"></a><span class="co">#| include: false</span></span>
<span id="cb7-4"><a href="#cb7-4"></a><span class="fu">library</span>(tidyverse)</span>
<span id="cb7-5"><a href="#cb7-5"></a><span class="fu">library</span>(palmerpenguins)</span>
<span id="cb7-6"><a href="#cb7-6"></a></span>
<span id="cb7-7"><a href="#cb7-7"></a>penguin_filter <span class="ot"><-</span> penguins <span class="sc">|></span></span>
<span id="cb7-8"><a href="#cb7-8"></a> <span class="fu">filter</span>(species <span class="sc">==</span> params<span class="sc">$</span>species,</span>
<span id="cb7-9"><a href="#cb7-9"></a> <span class="sc">!</span><span class="fu">is.na</span>(body_mass_g))</span>
<span id="cb7-10"><a href="#cb7-10"></a>diff_rows <span class="ot"><-</span> <span class="fu">nrow</span>(penguins) <span class="sc">-</span> <span class="fu">nrow</span>(penguin_filter)</span>
<span id="cb7-11"><a href="#cb7-11"></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="sourceCode" id="cb8"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb8-1"><a href="#cb8-1"></a>We have data about <span class="in">`r nrow(penguins)`</span> penguins. Only</span>
<span id="cb8-2"><a href="#cb8-2"></a><span class="in">`r diff_rows`</span> are classified as <span class="in">`r params$species`</span>. </span>
<span id="cb8-3"><a href="#cb8-3"></a>The distribution of the <span class="in">`r params$species`</span> penguins </span>
<span id="cb8-4"><a href="#cb8-4"></a>are shown below:</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="sourceCode" id="cb9"><pre class="sourceCode numberSource markdown code number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb9-1"><a href="#cb9-1"></a><span class="in">```{r}</span></span>
<span id="cb9-2"><a href="#cb9-2"></a><span class="co">#| echo: false</span></span>
<span id="cb9-3"><a href="#cb9-3"></a>penguin_filter <span class="sc">|></span></span>
<span id="cb9-4"><a href="#cb9-4"></a> <span class="fu">ggplot</span>(<span class="fu">aes</span>(body_mass_g)) <span class="sc">+</span></span>
<span id="cb9-5"><a href="#cb9-5"></a> <span class="fu">geom_histogram</span>(<span class="at">binwidth =</span> <span class="dv">100</span>)</span>
<span id="cb9-6"><a href="#cb9-6"></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="column fragment" style="width:44%;">
<p><img data-src="images/penguin-report.png" alt="A screenshot of the output report, displaying the title, date, information about the penguins and a basic histogram."></p>
</div>
</div>
</section><section id="render-with-parameters-1" class="slide level2"><h2>Render with Parameters</h2>
<div class="sourceCode" id="cb10"><pre class="sourceCode numberSource bash number-lines code-with-copy"><code class="sourceCode bash"><span id="cb10-1"><a href="#cb10-1"></a><span class="ex">quarto</span> render penguin-report.qmd <span class="at">-P</span> species:Gentoo <span class="at">--output</span> gentoo-report.html</span>
<span id="cb10-2"><a href="#cb10-2"></a><span class="ex">quarto</span> render penguin-report.ipynb <span class="at">-P</span> species:Gentoo <span class="at">--output</span> gentoo-report.html</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<div class="cell">
<div class="sourceCode cell-code" id="cb11"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb11-1"><a href="#cb11-1"></a>render_fun <span class="ot"><-</span> <span class="cf">function</span>(penguin){</span>
<span id="cb11-2"><a href="#cb11-2"></a> quarto<span class="sc">::</span><span class="fu">quarto_render</span>(</span>
<span id="cb11-3"><a href="#cb11-3"></a> <span class="at">input =</span> <span class="st">"penguin-report.qmd"</span>,</span>
<span id="cb11-4"><a href="#cb11-4"></a> <span class="at">execute_params =</span> <span class="fu">list</span>(<span class="at">species =</span> penguin),</span>
<span id="cb11-5"><a href="#cb11-5"></a> <span class="at">output_file =</span> glue<span class="sc">::</span><span class="fu">glue</span>(<span class="st">"{penguin}-report.html"</span>)</span>
<span id="cb11-6"><a href="#cb11-6"></a> )</span>
<span id="cb11-7"><a href="#cb11-7"></a>}</span>
<span id="cb11-8"><a href="#cb11-8"></a></span>
<span id="cb11-9"><a href="#cb11-9"></a><span class="fu">unique</span>(penguins<span class="sc">$</span>species) <span class="sc">|></span></span>
<span id="cb11-10"><a href="#cb11-10"></a> <span class="fu">as.character</span>() <span class="sc">|></span> </span>
<span id="cb11-11"><a href="#cb11-11"></a> purrr<span class="sc">::</span><span class="fu">walk</span>(render_fun)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
<div class="fragment">
<div class="sourceCode" id="cb12"><pre class="sourceCode numberSource code number-lines code-with-copy"><code class="sourceCode"><span id="cb12-1"><a href="#cb12-1"></a>Output created: Adelie-report.html</span>
<span id="cb12-2"><a href="#cb12-2"></a>Output created: Chinstrap-report.html</span>
<span id="cb12-3"><a href="#cb12-3"></a>Output created: Gentoo-report.html</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="parameters-for-modeling" class="slide level2"><h2>Parameters for modeling</h2>
<p><a href="https://www.tidymodels.org/learn/models/parsnip-ranger-glmnet/">Example adapted from <code>tidymodels</code> docs</a></p>
<div class="sourceCode" id="cb13"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb13-1"><a href="#cb13-1"></a><span class="pp">---</span></span>
<span id="cb13-2"><a href="#cb13-2"></a><span class="fu">format</span><span class="kw">:</span><span class="at"> html</span></span>
<span id="cb13-3"><a href="#cb13-3"></a><span class="fu">params</span><span class="kw">:</span></span>
<span id="cb13-4"><a href="#cb13-4"></a><span class="at"> </span><span class="fu">engine</span><span class="kw">:</span><span class="at"> </span><span class="st">"ranger"</span></span>
<span id="cb13-5"><a href="#cb13-5"></a><span class="pp">---</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<div class="sourceCode" id="cb14"><pre class="sourceCode numberSource bash number-lines code-with-copy"><code class="sourceCode bash"><span id="cb14-1"><a href="#cb14-1"></a><span class="ex">quarto</span> render tidymodels-example.qmd <span class="at">-P</span> engine:randomForest</span>
<span id="cb14-2"><a href="#cb14-2"></a><span class="ex">quarto</span> render tidymodels-example.qmd <span class="at">-P</span> engine:ranger</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="fragment">
<p><br></p>
<div class="columns">
<div class="column fragment" style="width:44%;">
<div class="sourceCode" id="cb15"><pre class="sourceCode numberSource code number-lines code-with-copy"><code class="sourceCode"><span id="cb15-1"><a href="#cb15-1"></a>test_results %>% slice(1:5)</span>
<span id="cb15-2"><a href="#cb15-2"></a></span>
<span id="cb15-3"><a href="#cb15-3"></a>#> # A tibble: 5 × 2</span>
<span id="cb15-4"><a href="#cb15-4"></a>#> Sale_Price .pred</span>
<span id="cb15-5"><a href="#cb15-5"></a>#> <dbl> <dbl></span>
<span id="cb15-6"><a href="#cb15-6"></a>#> 1 5.39 5.27</span>
<span id="cb15-7"><a href="#cb15-7"></a>#> 2 5.28 5.29</span>
<span id="cb15-8"><a href="#cb15-8"></a>#> 3 5.23 5.26</span>
<span id="cb15-9"><a href="#cb15-9"></a>#> 4 5.21 5.25</span>
<span id="cb15-10"><a href="#cb15-10"></a>#> 5 5.60 5.52</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="sourceCode" id="cb16"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb16-1"><a href="#cb16-1"></a>test_results <span class="sc">%>%</span> <span class="fu">metrics</span>(<span class="at">truth =</span> Sale_Price, </span>
<span id="cb16-2"><a href="#cb16-2"></a> <span class="at">estimate =</span> .pred) </span>
<span id="cb16-3"><a href="#cb16-3"></a></span>
<span id="cb16-4"><a href="#cb16-4"></a><span class="co">#> # A tibble: 3 × 3</span></span>
<span id="cb16-5"><a href="#cb16-5"></a><span class="co">#> .metric .estimator .estimate</span></span>
<span id="cb16-6"><a href="#cb16-6"></a><span class="co">#> <chr> <chr> <dbl></span></span>
<span id="cb16-7"><a href="#cb16-7"></a><span class="co">#> 1 rmse standard 0.0925</span></span>
<span id="cb16-8"><a href="#cb16-8"></a><span class="co">#> 2 rsq standard 0.742 </span></span>
<span id="cb16-9"><a href="#cb16-9"></a><span class="co">#> 3 mae standard 0.0620</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="column fragment" style="width:44%;">
<div class="sourceCode" id="cb17"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb17-1"><a href="#cb17-1"></a>test_results <span class="sc">%>%</span> <span class="fu">slice</span>(<span class="dv">1</span><span class="sc">:</span><span class="dv">5</span>)</span>
<span id="cb17-2"><a href="#cb17-2"></a></span>
<span id="cb17-3"><a href="#cb17-3"></a><span class="co">#> # A tibble: 5 × 2</span></span>
<span id="cb17-4"><a href="#cb17-4"></a><span class="co">#> Sale_Price .pred</span></span>
<span id="cb17-5"><a href="#cb17-5"></a><span class="co">#> <dbl> <dbl></span></span>
<span id="cb17-6"><a href="#cb17-6"></a><span class="co">#> 1 5.39 5.27</span></span>
<span id="cb17-7"><a href="#cb17-7"></a><span class="co">#> 2 5.28 5.28</span></span>
<span id="cb17-8"><a href="#cb17-8"></a><span class="co">#> 3 5.23 5.26</span></span>
<span id="cb17-9"><a href="#cb17-9"></a><span class="co">#> 4 5.21 5.32</span></span>
<span id="cb17-10"><a href="#cb17-10"></a><span class="co">#> 5 5.60 5.51</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="sourceCode" id="cb18"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb18-1"><a href="#cb18-1"></a>test_results <span class="sc">%>%</span> <span class="fu">metrics</span>(<span class="at">truth =</span> Sale_Price, </span>
<span id="cb18-2"><a href="#cb18-2"></a> <span class="at">estimate =</span> .pred) </span>
<span id="cb18-3"><a href="#cb18-3"></a></span>
<span id="cb18-4"><a href="#cb18-4"></a><span class="co">#> # A tibble: 3 × 3</span></span>
<span id="cb18-5"><a href="#cb18-5"></a><span class="co">#> .metric .estimator .estimate</span></span>
<span id="cb18-6"><a href="#cb18-6"></a><span class="co">#> <chr> <chr> <dbl></span></span>
<span id="cb18-7"><a href="#cb18-7"></a><span class="co">#> 1 rmse standard 0.0944</span></span>
<span id="cb18-8"><a href="#cb18-8"></a><span class="co">#> 2 rsq standard 0.731 </span></span>
<span id="cb18-9"><a href="#cb18-9"></a><span class="co">#> 3 mae standard 0.0626</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
</div>
</section><section><section id="unified-syntax" class="title-slide slide level1 center" data-background-color="#447099"><h1>Unified Syntax</h1>
</section><section id="quartos-unified-syntax" class="slide level2"><h2>Quarto’s unified syntax</h2>
<div style="font-size: 65px;">
<div class="sourceCode" id="cb19"><pre class="sourceCode numberSource bash number-lines code-with-copy"><code class="sourceCode bash"><span id="cb19-1"><a href="#cb19-1"></a><span class="ex">quarto</span> render boston-terrier.qmd <span class="at">--to</span> html</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="fragment">
<div style="font-size: 65px;">
<div class="sourceCode" id="cb20"><pre class="sourceCode numberSource bash number-lines code-with-copy"><code class="sourceCode bash"><span id="cb20-1"><a href="#cb20-1"></a><span class="ex">quarto</span> render boston-terrier.qmd <span class="at">--to</span> pdf</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
</section></section><section><section id="section" class="title-slide slide level1 center"><h1></h1>
<div class="columns" style="margin-top: -100px;">
<div class="column" style="width:45%;">
<div class="quarto-figure quarto-figure-center">
<figure><p><img data-src="images/boston-history-html.jpeg" alt="A screenshot of a HTML article about Boston Terriers, the document has an image in the right hard margin, a floating table of contents, and different sections split up by headers"></p>
<p></p><figcaption>HTML</figcaption><p></p>
</figure>
</div>
</div>
<div class="column fragment" style="width:50%;">
<div class="quarto-figure quarto-figure-center">
<figure><p><img data-src="images/boston-history-pdf.jpeg" alt="A screenshot of a PDF article about Boston Terriers, the document has an image in the right hard margin, a floating table of contents, and different sections split up by headers"></p>
<p></p><figcaption>PDF</figcaption><p></p>
</figure>
</div>
</div>
</div>
</section><section id="pandoc-fenced-divs" class="slide level2"><h2>Pandoc fenced divs</h2>
<div class="sourceCode" id="cb21"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb21-1"><a href="#cb21-1"></a>::: {.class}</span>
<span id="cb21-2"><a href="#cb21-2"></a>All this content can be modified</span>
<span id="cb21-3"><a href="#cb21-3"></a>:::</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<p>Structure:</p>
<ul>
<li>Start and end with equal number of <code>:</code> - minimum of 3 <code>:::</code>
</li>
<li>Add curly brackets to indicate the start/end of class <code>{.class}</code> or <code>{sometimes-class}</code>
</li>
</ul>
</div>
<div class="fragment">
<div class="sourceCode" id="cb22"><pre class="sourceCode numberSource code number-lines code-with-copy"><code class="sourceCode"><span id="cb22-1"><a href="#cb22-1"></a>::: {layout-ncol=2}</span>
<span id="cb22-2"><a href="#cb22-2"></a></span>
<span id="cb22-3"><a href="#cb22-3"></a>{fig-alt="Description of image 1"}</span>
<span id="cb22-4"><a href="#cb22-4"></a></span>
<span id="cb22-5"><a href="#cb22-5"></a>{fig-alt="Description of image 1"}</span>
<span id="cb22-6"><a href="#cb22-6"></a>:::</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="tabsets" class="slide level2"><h2>Tabsets</h2>
<p>Split up and flip between sections of a page, alternative to just two columns</p>
<div class="sourceCode" id="cb23"><pre class="sourceCode numberSource code number-lines code-with-copy"><code class="sourceCode"><span id="cb23-1"><a href="#cb23-1"></a>::: {.panel-tabset}</span>
<span id="cb23-2"><a href="#cb23-2"></a></span>
<span id="cb23-3"><a href="#cb23-3"></a>## Element 1</span>
<span id="cb23-4"><a href="#cb23-4"></a>...content...</span>
<span id="cb23-5"><a href="#cb23-5"></a></span>
<span id="cb23-6"><a href="#cb23-6"></a>## Element 2</span>
<span id="cb23-7"><a href="#cb23-7"></a>...content...</span>
<span id="cb23-8"><a href="#cb23-8"></a>:::</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</section><section id="tabsets-1" class="slide level2"><h2>Tabsets</h2>
<div class="panel-tabset">
<ul id="tabset-1" class="panel-tabset-tabby">
<li><a data-tabby-default="" href="#tabset-1-1">Code</a></li>
<li><a href="#tabset-1-2">Output</a></li>
</ul>
<div class="tab-content">
<div id="tabset-1-1">
<div class="cell">
<div class="sourceCode cell-code" id="cb24"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb24-1"><a href="#cb24-1"></a><span class="in">```{r}</span></span>
<span id="cb24-2"><a href="#cb24-2"></a><span class="co">#| eval: false</span></span>
<span id="cb24-3"><a href="#cb24-3"></a><span class="fu">head</span>(mtcars)</span>
<span id="cb24-4"><a href="#cb24-4"></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
<div id="tabset-1-2">
<div class="cell">
<div class="cell-output cell-output-stdout">
<pre><code> mpg cyl disp hp drat wt qsec vs am gear carb
Mazda RX4 21.0 6 160 110 3.90 2.620 16.46 0 1 4 4
Mazda RX4 Wag 21.0 6 160 110 3.90 2.875 17.02 0 1 4 4
Datsun 710 22.8 4 108 93 3.85 2.320 18.61 1 1 4 1
Hornet 4 Drive 21.4 6 258 110 3.08 3.215 19.44 1 0 3 1
Hornet Sportabout 18.7 8 360 175 3.15 3.440 17.02 0 0 3 2
Valiant 18.1 6 225 105 2.76 3.460 20.22 1 0 3 1</code></pre>
</div>
</div>
</div>
</div>
</div>
</section><section id="tabsets-2" class="slide level2"><h2>Tabsets</h2>
<div class="sourceCode" id="cb26"><pre class="sourceCode markdown code-with-copy"><code class="sourceCode markdown"><span id="cb26-1"><a href="#cb26-1" aria-hidden="true" tabindex="-1"></a>::: {.panel-tabset}</span>
<span id="cb26-2"><a href="#cb26-2" aria-hidden="true" tabindex="-1"></a><span class="fu">## Code</span></span>
<span id="cb26-3"><a href="#cb26-3" aria-hidden="true" tabindex="-1"></a><span class="in">```{r}</span></span>
<span id="cb26-4"><a href="#cb26-4" aria-hidden="true" tabindex="-1"></a><span class="co">#| echo: fenced</span></span>
<span id="cb26-5"><a href="#cb26-5" aria-hidden="true" tabindex="-1"></a><span class="co">#| eval: false</span></span>
<span id="cb26-6"><a href="#cb26-6" aria-hidden="true" tabindex="-1"></a><span class="fu">head</span>(mtcars)</span>
<span id="cb26-7"><a href="#cb26-7" aria-hidden="true" tabindex="-1"></a><span class="in">```</span></span>
<span id="cb26-8"><a href="#cb26-8" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb26-9"><a href="#cb26-9" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb26-10"><a href="#cb26-10" aria-hidden="true" tabindex="-1"></a><span class="fu">## Output</span></span>
<span id="cb26-11"><a href="#cb26-11" aria-hidden="true" tabindex="-1"></a><span class="in">```{r}</span></span>
<span id="cb26-12"><a href="#cb26-12" aria-hidden="true" tabindex="-1"></a><span class="co">#| eval: true</span></span>
<span id="cb26-13"><a href="#cb26-13" aria-hidden="true" tabindex="-1"></a><span class="co">#| echo: false</span></span>
<span id="cb26-14"><a href="#cb26-14" aria-hidden="true" tabindex="-1"></a><span class="fu">head</span>(mtcars)</span>
<span id="cb26-15"><a href="#cb26-15" aria-hidden="true" tabindex="-1"></a><span class="in">```</span></span>
<span id="cb26-16"><a href="#cb26-16" aria-hidden="true" tabindex="-1"></a>:::</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</section><section id="pandoc-bracketed-spans" class="slide level2"><h2>Pandoc bracketed spans</h2>
<p>This is <span class="fragment">magic text</span></p>
<div class="fragment">
<div class="sourceCode" id="cb27"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb27-1"><a href="#cb27-1"></a><span class="fu"># this only works in presentations</span></span>
<span id="cb27-2"><a href="#cb27-2"></a>This is <span class="co">[</span><span class="ot">magic text</span><span class="co">]</span>{.fragment}</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="fragment">
<p>Structure:</p>
<ul>
<li>Surround text with <code>[text]</code>
</li>
<li>Add curly brackets to indicate the start/end of class <code>{.class}</code> or <code>{sometimes-class}</code>
</li>
</ul>
</div>
</section><section id="footnotes" class="slide level2"><h2>Footnotes</h2>
<p>You can create inline footnotes like so: <code>some inline text with a^[footnote]</code></p>
<div class="fragment">
<p>If you hover your mouse over the citation and footnote in this sentence you’ll see a popup displaying the reference contents:</p>
<div class="sourceCode" id="cb28"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb28-1"><a href="#cb28-1"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb28-2"><a href="#cb28-2"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span></span>
<span id="cb28-3"><a href="#cb28-3"></a><span class="at"> </span><span class="fu">citations-hover</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span>
<span id="cb28-4"><a href="#cb28-4"></a><span class="at"> </span><span class="fu">footnotes-hover</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="fragment">
<p><br></p>
<div class="sourceCode" id="cb29"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb29-1"><a href="#cb29-1"></a>For example, did you know that Howard is a dog^[Specifically he is a Boston Terrier, although</span>
<span id="cb29-2"><a href="#cb29-2"></a>sometimes he acts like a cat]?</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="unified-syntax-1" class="slide level2"><h2>Unified syntax</h2>
<p>Layout image inline with paragraphs</p>
<div class="sourceCode" id="cb30"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb30-1"><a href="#cb30-1"></a>::: {layout="[<span class="co">[</span><span class="ot">30, 70</span><span class="co">]</span>, <span class="co">[</span><span class="ot">100</span><span class="co">]</span>]"}</span>
<span id="cb30-2"><a href="#cb30-2"></a>!<span class="co">[</span><span class="ot">Terrier Seated</span><span class="co">]</span>(Terrier_Seated_(Boston_Public_Library).jpeg){width="50%" fig-alt="Description of boston terrier"} </span>
<span id="cb30-3"><a href="#cb30-3"></a></span>
<span id="cb30-4"><a href="#cb30-4"></a>...paragraph 1... </span>
<span id="cb30-5"><a href="#cb30-5"></a></span>
<span id="cb30-6"><a href="#cb30-6"></a>...paragraph 2...</span>
<span id="cb30-7"><a href="#cb30-7"></a></span>
<span id="cb30-8"><a href="#cb30-8"></a>:::</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<p>Put image into the “gutter”/column margin</p>
<div class="sourceCode" id="cb31"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb31-1"><a href="#cb31-1"></a><span class="al"></span>{.column-margin fig-alt="Description of a young male Boston Terrier with a Brown brindle coat"}</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="fragment">
<p>Add footnotes:</p>
<div class="sourceCode" id="cb32"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb32-1"><a href="#cb32-1"></a>The average life span of a Boston Terrier is around 11 to 13 years.^<span class="co">[</span><span class="ot">"The Boston Terrier Club Of America". Bostonterrierclubofamerica.org.</span><span class="co">]</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section></section><section><section id="code-1" class="title-slide slide level1 center" data-background-color="#447099"><h1>Code</h1>
</section><section id="hide-all-code" class="slide level2"><h2>Hide all code</h2>
<div class="sourceCode" id="cb33"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb33-1"><a href="#cb33-1"></a><span class="fu">format</span><span class="kw">:</span><span class="at"> html</span></span>
<span id="cb33-2"><a href="#cb33-2"></a><span class="fu">execute</span><span class="kw">:</span></span>
<span id="cb33-3"><a href="#cb33-3"></a><span class="at"> </span><span class="fu">echo</span><span class="kw">:</span><span class="at"> </span><span class="ch">false</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<p>Turn back on at individual code-block level:</p>
<div class="sourceCode" id="cb34"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb34-1"><a href="#cb34-1"></a><span class="co">#| echo: true</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="fold-code" class="slide level2"><h2>Fold code</h2>
<div class="sourceCode" id="cb35"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb35-1"><a href="#cb35-1"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb35-2"><a href="#cb35-2"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span></span>
<span id="cb35-3"><a href="#cb35-3"></a><span class="at"> </span><span class="fu">code-fold</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span>
<span id="cb35-4"><a href="#cb35-4"></a><span class="at"> </span><span class="fu">code-summary</span><span class="kw">:</span><span class="at"> </span><span class="st">"Hidden code"</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<p>Turn on at individual code-block level:</p>
<div class="sourceCode" id="cb36"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb36-1"><a href="#cb36-1"></a><span class="co">#| code-fold: true</span></span>
<span id="cb36-2"><a href="#cb36-2"></a><span class="co">#| code-summary: "Hidden code"</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="code-tools" class="slide level2"><h2>Code tools</h2>
<div class="sourceCode" id="cb37"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb37-1"><a href="#cb37-1"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb37-2"><a href="#cb37-2"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span></span>
<span id="cb37-3"><a href="#cb37-3"></a><span class="at"> </span><span class="fu">code-fold</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span>
<span id="cb37-4"><a href="#cb37-4"></a><span class="at"> </span><span class="fu">code-tools</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<p><img data-src="https://quarto.org/docs/output-formats/images/code-tools-01.png" alt="Screenshot of Quarto document with the Code tools dropdown"></p>
</div>
</section><section id="code-tools-source" class="slide level2"><h2>Code tools, source</h2>
<blockquote>
<p>For example, here we specify that we want only “View Source” (no toggling of code visibility) and no caption on the code menu:</p>
</blockquote>
<div class="sourceCode" id="cb38"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb38-1"><a href="#cb38-1"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb38-2"><a href="#cb38-2"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span><span class="at"> </span></span>
<span id="cb38-3"><a href="#cb38-3"></a><span class="at"> </span><span class="fu">code-tools</span><span class="kw">:</span></span>
<span id="cb38-4"><a href="#cb38-4"></a><span class="at"> </span><span class="fu">source</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span>
<span id="cb38-5"><a href="#cb38-5"></a><span class="at"> </span><span class="fu">toggle</span><span class="kw">:</span><span class="at"> </span><span class="ch">false</span></span>
<span id="cb38-6"><a href="#cb38-6"></a><span class="at"> </span><span class="fu">caption</span><span class="kw">:</span><span class="at"> none</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<p><img data-src="https://quarto.org/docs/output-formats/images/code-tools-source.png" alt="Screenshot of Quarto document with the source option overlay"></p>
</div>
</section><section id="code-tools-source-repo" class="slide level2"><h2>Code tools, source repo</h2>
<p>In some situations (especially for longer documents), you may prefer to send viewers to the source code on a version-control website rather than the built in viewer.</p>
<div class="fragment">
<div class="sourceCode" id="cb39"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb39-1"><a href="#cb39-1"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb39-2"><a href="#cb39-2"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span><span class="at"> </span></span>
<span id="cb39-3"><a href="#cb39-3"></a><span class="at"> </span><span class="fu">code-tools</span><span class="kw">:</span></span>
<span id="cb39-4"><a href="#cb39-4"></a><span class="at"> </span><span class="fu">source</span><span class="kw">:</span><span class="at"> https://github.com/quarto-dev/quarto-web/blob/main/index.md</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section></section><section><section id="code-appearance" class="title-slide slide level1 center" data-background-color="#447099"><h1>Code appearance</h1>
</section><section id="code-highlighting" class="slide level2"><h2>Code highlighting</h2>
<p><a href="https://quarto.org/docs/output-formats/html-code.html#highlighting">Full highlighting options</a></p>
<div class="cell">
<div class="sourceCode cell-code" id="cb40"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb40-1"><a href="#cb40-1"></a><span class="fu">library</span>(dplyr)</span>
<span id="cb40-2"><a href="#cb40-2"></a>mtcars <span class="sc">|></span> </span>
<span id="cb40-3"><a href="#cb40-3"></a> <span class="fu">group_by</span>(cyl, am) <span class="sc">|></span> </span>
<span id="cb40-4"><a href="#cb40-4"></a> <span class="fu">summarize</span>(<span class="at">mean =</span> <span class="fu">mean</span>(mpg), <span class="at">n =</span> <span class="fu">n</span>(), <span class="at">.groups =</span> <span class="st">"drop"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code># A tibble: 6 × 4
cyl am mean n
<dbl> <dbl> <dbl> <int>
1 4 0 22.9 3
2 4 1 28.1 8
3 6 0 19.1 4
4 6 1 20.6 3
5 8 0 15.0 12
6 8 1 15.4 2</code></pre>
</div>
</div>
</section><section id="code-highlighting-1" class="slide level2"><h2>Code highlighting</h2>
<div class="sourceCode" id="cb42"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb42-1"><a href="#cb42-1"></a><span class="fu">format</span><span class="kw">:</span><span class="at"> </span></span>
<span id="cb42-2"><a href="#cb42-2"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span></span>
<span id="cb42-3"><a href="#cb42-3"></a><span class="at"> </span><span class="fu">highlight-style</span><span class="kw">:</span><span class="at"> arrow</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<img data-src="https://quarto.org/docs/output-formats/images/arrow.png" class="nostretch r-stretch" style="width:50.0%" alt="Screenshot of code with a light theme on white background"></section><section id="code-highlighting-2" class="slide level2"><h2>Code highlighting</h2>
<div class="sourceCode" id="cb43"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb43-1"><a href="#cb43-1"></a><span class="fu">format</span><span class="kw">:</span><span class="at"> </span></span>
<span id="cb43-2"><a href="#cb43-2"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span></span>
<span id="cb43-3"><a href="#cb43-3"></a><span class="at"> </span><span class="fu">highlight-style</span><span class="kw">:</span><span class="at"> arrow</span></span>
<span id="cb43-4"><a href="#cb43-4"></a><span class="at"> </span><span class="fu">theme</span><span class="kw">:</span></span>
<span id="cb43-5"><a href="#cb43-5"></a><span class="at"> </span><span class="fu">light</span><span class="kw">:</span><span class="at"> flatly</span></span>
<span id="cb43-6"><a href="#cb43-6"></a><span class="at"> </span><span class="fu">dark</span><span class="kw">:</span><span class="at"> darkly</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<p><img data-src="https://quarto.org/docs/output-formats/images/html-dark.png" alt="Screenshot of dark mode toggle in Quarto doc."></p>
</div>
<div class="fragment">
<p><img data-src="https://quarto.org/docs/output-formats/images/arrow-dark.png" alt="Screenshot of code with a light theme on white background"></p>
</div>
</section><section id="code-linking-with-downlit" class="slide level2"><h2>Code linking with <a href="https://downlit.r-lib.org/"><code>downlit</code></a>
</h2>
<blockquote>
<p>The goal of <code>downlit</code> is to provide syntax highlighting and automatic linking of R code</p>
</blockquote>
<div class="sourceCode" id="cb44"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb44-1"><a href="#cb44-1"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb44-2"><a href="#cb44-2"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span></span>
<span id="cb44-3"><a href="#cb44-3"></a><span class="at"> </span><span class="fu">code-link</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</section></section><section><section id="aesthetics" class="title-slide slide level1 center" data-background-image="images/howard-gentleman.jpeg" data-background-size="contain" data-background-position="right" data-background-color="black"><h1>Aesthetics</h1>
</section><section id="html-appearance" class="slide level2"><h2>HTML Appearance</h2>
<p>Out of the box, Quarto is styled with Bootstrap 5 and opinionated defaults.</p>
<p>Bootstrap is the most popular CSS Framework for responsive websites, where v5 is the latest.</p>
<div class="fragment">
<p>Quarto comes pre-installed with 25 themes from <a href="https://bootswatch.com/">Bootswatch</a> and you can use them like so:</p>
<div class="sourceCode" id="cb45"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb45-1"><a href="#cb45-1"></a><span class="pp">---</span></span>
<span id="cb45-2"><a href="#cb45-2"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb45-3"><a href="#cb45-3"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span></span>
<span id="cb45-4"><a href="#cb45-4"></a><span class="at"> </span><span class="fu">theme</span><span class="kw">:</span><span class="at"> litera</span></span>
<span id="cb45-5"><a href="#cb45-5"></a><span class="pp">---</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<p><br></p>
</div>
<div class="fragment">
<p>Or you can customize a theme with CSS/SCSS/SASS.</p>
<div class="sourceCode" id="cb46"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb46-1"><a href="#cb46-1"></a><span class="pp">---</span></span>
<span id="cb46-2"><a href="#cb46-2"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb46-3"><a href="#cb46-3"></a><span class="at"> </span><span class="fu">html</span><span class="kw">:</span></span>
<span id="cb46-4"><a href="#cb46-4"></a><span class="at"> </span><span class="fu">theme</span><span class="kw">:</span><span class="at"> </span></span>
<span id="cb46-5"><a href="#cb46-5"></a><span class="at"> </span><span class="kw">-</span><span class="at"> litera</span></span>
<span id="cb46-6"><a href="#cb46-6"></a><span class="at"> </span><span class="kw">-</span><span class="at"> custom.scss</span></span>
<span id="cb46-7"><a href="#cb46-7"></a><span class="pp">---</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="bootswatch-themes" class="slide level2"><h2>Bootswatch themes</h2>
<img data-src="images/bootswatch.png" alt="Screenshot of 6 bootswatch themes" class="r-stretch"></section><section id="pdf-articles" class="slide level2"><h2>PDF Articles</h2>
<div class="sourceCode" id="cb47"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb47-1"><a href="#cb47-1"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb47-2"><a href="#cb47-2"></a><span class="at"> </span><span class="fu">pdf</span><span class="kw">:</span></span>
<span id="cb47-3"><a href="#cb47-3"></a><span class="at"> </span><span class="fu">template</span><span class="kw">:</span><span class="at"> mytemplate.tex</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<p><br></p>
<p>See more on Journal Articles at <a href="https://github.com/quarto-journals/" class="uri">https://github.com/quarto-journals/</a></p>
<div class="columns">
<div class="column fragment" style="width:35%;">
<div class="sourceCode" id="cb48"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb48-1"><a href="#cb48-1"></a><span class="pp">----</span></span>
<span id="cb48-2"><a href="#cb48-2"></a><span class="fu">title</span><span class="kw">:</span><span class="at"> </span><span class="st">"My Document"</span></span>
<span id="cb48-3"><a href="#cb48-3"></a><span class="fu">toc</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span>
<span id="cb48-4"><a href="#cb48-4"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb48-5"><a href="#cb48-5"></a><span class="at"> </span><span class="fu">acm-pdf</span><span class="kw">:</span><span class="at"> default</span></span>
<span id="cb48-6"><a href="#cb48-6"></a><span class="at"> </span><span class="fu">acm-html</span><span class="kw">:</span><span class="at"> default</span></span>
<span id="cb48-7"><a href="#cb48-7"></a><span class="pp">---</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="column fragment" style="width:60%;">
<p><img data-src="images/jss.png" alt="Screenshot of a rendered Quarto document to the Journal of Statistical Science format."></p>
</div>
</div>
</div>
</section><section id="more-pdf-latex-templates" class="slide level2"><h2>More PDF + LaTeX templates</h2>
<p>Great work from the NFMS Open Science team on “Quarto titlepages”: <a href="https://nmfs-opensci.github.io/quarto_titlepages/" class="uri">https://nmfs-opensci.github.io/quarto_titlepages/</a></p>
<blockquote>
<p>The tex templates were written by <a href="https://github.com/eeholmes">Eli Holmes</a> and the lua filter along with changes to the Pandoc templates to allow themes was written by <a href="https://github.com/mcanouil">Mickaël Canouil</a>.</p>
</blockquote>
<div class="fragment">
<p><img data-src="https://nmfs-opensci.github.io/quarto_titlepages/images/bg-image.png" alt="A screenshot of the titlepages Quarto output PDF. It has a logo, along with the title information and the affiliations of the authors."></p>
</div>
</section></section><section><section id="presentations" class="title-slide slide level1 center" data-background-color="#447099"><h1>Presentations</h1>
</section><section id="output-types" class="slide level2"><h2>Output types</h2>
<ul>
<li>
<p>Quarto supports a variety of formats for creating presentations, including:</p>
<ul>
<li><p><code>revealjs</code> — <a href="https://quarto.org/docs/presentations/revealjs/">reveal.js</a> (HTML)</p></li>
<li><p><code>pptx</code> — <a href="https://quarto.org/docs/presentations/powerpoint.html">PowerPoint</a> (MS Office)</p></li>
<li><p><code>beamer</code> — <a href="https://quarto.org/docs/presentations/beamer.html">Beamer</a> (LaTeX/PDF)</p></li>
</ul>
</li>
</ul></section><section id="follow-up-reading" class="slide level2"><h2>Follow-up reading</h2>
<ul>
<li>Emil Hvitfeldt’s <a href="https://www.emilhvitfeldt.com/post/slidecraft-colors-fonts/">Slidecraft 101: Colors and Fonts</a>
</li>
<li>Meghan Hall’s <a href="https://meghan.rbind.io/blog/quarto-slides/">Quarto Slides</a>
</li>
</ul></section><section id="shared-structures" class="slide level2"><h2>Shared structures</h2>
<ul>
<li>Incremental reveal/lists</li>
<li>Multiple columns for layout</li>
<li>Title/subtitle/author/etc</li>
<li>Headings</li>
<li>Code/Output</li>
</ul></section><section id="creating-slides" class="slide level2"><h2>Creating slides</h2>
<div class="sourceCode" id="cb49"><pre class="sourceCode numberSource code number-lines code-with-copy"><code class="sourceCode"><span id="cb49-1"><a href="#cb49-1"></a>---</span>
<span id="cb49-2"><a href="#cb49-2"></a>format: revealjs</span>
<span id="cb49-3"><a href="#cb49-3"></a>---</span>
<span id="cb49-4"><a href="#cb49-4"></a></span>
<span id="cb49-5"><a href="#cb49-5"></a>## Slide 1</span>
<span id="cb49-6"><a href="#cb49-6"></a></span>
<span id="cb49-7"><a href="#cb49-7"></a>## Slide 2</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</section><section id="incremental-lists" class="slide level2"><h2>Incremental Lists</h2>
<p>Controllable via YAML:</p>
<div class="sourceCode" id="cb50"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb50-1"><a href="#cb50-1"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb50-2"><a href="#cb50-2"></a><span class="at"> </span><span class="fu">pptx</span><span class="kw">:</span></span>
<span id="cb50-3"><a href="#cb50-3"></a><span class="at"> </span><span class="fu">incremental</span><span class="kw">:</span><span class="at"> </span><span class="ch">true</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="fragment">
<p>Or turn on/off via fenced divs:</p>
<div class="columns">
<div class="column fragment" style="width:45%;">
<div class="sourceCode" id="cb51"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb51-1"><a href="#cb51-1"></a>::: {.incremental}</span>
<span id="cb51-2"><a href="#cb51-2"></a></span>
<span id="cb51-3"><a href="#cb51-3"></a><span class="ss">- </span>Howard sleeps</span>
<span id="cb51-4"><a href="#cb51-4"></a><span class="ss">- </span>Howard sprints</span>
<span id="cb51-5"><a href="#cb51-5"></a></span>
<span id="cb51-6"><a href="#cb51-6"></a>:::</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="column fragment" style="width:45%;">
<div class="sourceCode" id="cb52"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb52-1"><a href="#cb52-1"></a>::: {.nonincremental}</span>
<span id="cb52-2"><a href="#cb52-2"></a></span>
<span id="cb52-3"><a href="#cb52-3"></a><span class="ss">- </span>Howard eats</span>
<span id="cb52-4"><a href="#cb52-4"></a><span class="ss">- </span>Howard sleeps</span>
<span id="cb52-5"><a href="#cb52-5"></a></span>
<span id="cb52-6"><a href="#cb52-6"></a>:::</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
</div>
</section><section id="multiple-columns" class="slide level2"><h2>Multiple Columns</h2>
<div class="sourceCode" id="cb53"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb53-1"><a href="#cb53-1"></a>:::: {.columns}</span>
<span id="cb53-2"><a href="#cb53-2"></a></span>
<span id="cb53-3"><a href="#cb53-3"></a>::: {.column width="50%" .fragment}</span>
<span id="cb53-4"><a href="#cb53-4"></a>Left column</span>
<span id="cb53-5"><a href="#cb53-5"></a>:::</span>
<span id="cb53-6"><a href="#cb53-6"></a></span>
<span id="cb53-7"><a href="#cb53-7"></a>::: {.column width="50%" .fragment}</span>
<span id="cb53-8"><a href="#cb53-8"></a>Right column</span>
<span id="cb53-9"><a href="#cb53-9"></a>:::</span>
<span id="cb53-10"><a href="#cb53-10"></a></span>
<span id="cb53-11"><a href="#cb53-11"></a>::::</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</section></section><section><section id="presentations-with-format-revealjs" class="title-slide slide level1 center" data-background-color="#447099"><h1>Presentations with <code>format: revealjs</code>
</h1>
</section><section id="secret-tip" class="slide level2"><h2>SECRET TIP</h2>
<p><kbd>Alt + Click</kbd> to Zoom in to a section</p>
<div class="absolute fragment" style="left: 100px; bottom: 25px; ">
<p><img data-src="images/howard-gentleman.jpeg" alt="Howard dressed as a victorian gentleman" width="150"></p>
</div>
</section><section id="absolute-position" class="slide level2"><h2>Absolute Position</h2>
<p>Absolute position allows for tight control of placement.</p>
<div class="fragment">
<div class="sourceCode" id="cb54"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb54-1"><a href="#cb54-1"></a>::: {.absolute bottom=25 left=100 .fragment}</span>
<span id="cb54-2"><a href="#cb54-2"></a></span>
<span id="cb54-3"><a href="#cb54-3"></a><span class="al"></span>{width=150 fig-alt="Howard dressed as a victorian gentleman"}</span>
<span id="cb54-4"><a href="#cb54-4"></a></span>
<span id="cb54-5"><a href="#cb54-5"></a>:::</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="output-location-column-fragment" class="slide level2"><h2><code>output-location: column-fragment</code></h2>
<div class="cell columns column-output-location">
<div class="column">
<div class="sourceCode cell-code" id="cb55"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb55-1"><a href="#cb55-1"></a><span class="in">```{r}</span></span>
<span id="cb55-2"><a href="#cb55-2"></a><span class="co">#| output-location: column-fragment</span></span>
<span id="cb55-3"><a href="#cb55-3"></a><span class="fu">library</span>(ggplot2)</span>
<span id="cb55-4"><a href="#cb55-4"></a></span>
<span id="cb55-5"><a href="#cb55-5"></a><span class="fu">ggplot</span>(mtcars, <span class="fu">aes</span>(<span class="at">x =</span> mpg, <span class="at">y =</span> disp)) <span class="sc">+</span></span>
<span id="cb55-6"><a href="#cb55-6"></a> <span class="fu">geom_point</span>()</span>
<span id="cb55-7"><a href="#cb55-7"></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="column fragment">
<div class="cell-output-display">
<p><img data-src="quarto-reporting_files/figure-revealjs/unnamed-chunk-5-1.png" width="960"></p>
</div>
</div>
</div>
</section><section id="themes" class="slide level2"><h2>Themes</h2>
<p>Quarto comes with 10 built-in themes:</p>
<p><code>beige</code>, <code>blood</code>, <code>dark</code>, <code>default</code>, <code>league</code>, <code>moon</code>, <code>night</code>, <code>serif</code>, <code>simple</code>, <code>sky</code>, <code>solarized</code></p>
<div class="fragment">
<div class="sourceCode" id="cb56"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb56-1"><a href="#cb56-1"></a><span class="pp">---</span></span>
<span id="cb56-2"><a href="#cb56-2"></a><span class="fu">title</span><span class="kw">:</span><span class="at"> </span><span class="st">"Presentation"</span></span>
<span id="cb56-3"><a href="#cb56-3"></a><span class="fu">format</span><span class="kw">:</span></span>
<span id="cb56-4"><a href="#cb56-4"></a><span class="at"> </span><span class="fu">revealjs</span><span class="kw">:</span><span class="at"> </span></span>
<span id="cb56-5"><a href="#cb56-5"></a><span class="at"> </span><span class="fu">theme</span><span class="kw">:</span><span class="at"> </span><span class="kw">[</span><span class="at">simple</span><span class="kw">,</span><span class="at"> custom.scss</span><span class="kw">]</span></span>
<span id="cb56-6"><a href="#cb56-6"></a><span class="pp">---</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="themes-scsssass" class="slide level2"><h2>Themes + SCSS/SASS</h2>
<div class="sourceCode" id="cb57"><pre class="sourceCode numberSource css number-lines code-with-copy"><code class="sourceCode css"><span id="cb57-1"><a href="#cb57-1"></a><span class="im">@import</span> <span class="fu">url(</span><span class="st">'https://fonts.googleapis.com/css2?family=Fira+Mono&family=Open+Sans:ital,wght@0,300;0,400;0,500;0,600;0,700;0,800;1,300;1,400;1,500;1,600;1,700;1,800&display=swap'</span><span class="fu">)</span><span class="op">;</span></span>
<span id="cb57-2"><a href="#cb57-2"></a></span>
<span id="cb57-3"><a href="#cb57-3"></a><span class="co">/*-- scss:defaults --*/</span></span>
<span id="cb57-4"><a href="#cb57-4"></a></span>
<span id="cb57-5"><a href="#cb57-5"></a>$link-color<span class="in">: #EE6331</span>;</span>