rulegraph_simple.svg

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<!-- Generated by graphviz version 2.43.0 (0)
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<!-- Title: snakemake_dag Pages: 1 -->
<svg width="1248pt" height="230pt"
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<title>snakemake_dag</title>
<polygon fill="white" stroke="transparent" points="-4,4 -4,-226 1244,-226 1244,4 -4,4"/>
<g id="clust1" class="cluster">
<title>cluster_0</title>
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<text text-anchor="middle" x="51" y="-125" font-family="sans" font-size="10.00">Input</text>
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<g id="clust2" class="cluster">
<title>cluster_1</title>
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<text text-anchor="middle" x="337" y="-74" font-family="sans" font-size="10.00">Preprocess</text>
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<g id="clust3" class="cluster">
<title>cluster_2</title>
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<text text-anchor="middle" x="816" y="-202" font-family="sans" font-size="10.00">popoolation</text>
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<g id="clust4" class="cluster">
<title>cluster_3</title>
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<text text-anchor="middle" x="906" y="-73" font-family="sans" font-size="10.00">popoolation2</text>
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<!-- reads -->
<g id="node1" class="node">
<title>reads</title>
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<text text-anchor="middle" x="51" y="-93" font-family="sans" font-size="10.00">FASTQ</text>
<text text-anchor="middle" x="51" y="-82" font-family="sans" font-size="10.00">reads</text>
</g>
<!-- bwa -->
<g id="node4" class="node">
<title>bwa</title>
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<text text-anchor="middle" x="246" y="-36.5" font-family="sans" font-size="10.00">bwa&#45;mem2</text>
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<!-- reads&#45;&gt;bwa -->
<g id="edge1" class="edge">
<title>reads&#45;&gt;bwa</title>
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<!-- reference -->
<g id="node2" class="node">
<title>reference</title>
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<text text-anchor="middle" x="51" y="-39" font-family="sans" font-size="10.00">Reference</text>
<text text-anchor="middle" x="51" y="-28" font-family="sans" font-size="10.00">Genome</text>
</g>
<!-- index -->
<g id="node3" class="node">
<title>index</title>
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<text text-anchor="middle" x="147" y="-36.5" font-family="sans" font-size="10.00">index</text>
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<!-- reference&#45;&gt;index -->
<g id="edge2" class="edge">
<title>reference&#45;&gt;index</title>
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<!-- index&#45;&gt;bwa -->
<g id="edge3" class="edge">
<title>index&#45;&gt;bwa</title>
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<!-- split -->
<g id="node5" class="node">
<title>split</title>
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<text text-anchor="middle" x="345" y="-36.5" font-family="sans" font-size="10.00">split</text>
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<!-- bwa&#45;&gt;split -->
<g id="edge4" class="edge">
<title>bwa&#45;&gt;split</title>
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<!-- filter -->
<g id="node6" class="node">
<title>filter</title>
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<!-- split&#45;&gt;filter -->
<g id="edge5" class="edge">
<title>split&#45;&gt;filter</title>
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<!-- mpileup -->
<g id="node7" class="node">
<title>mpileup</title>
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<text text-anchor="middle" x="526" y="-36.5" font-family="sans" font-size="10.00">mpileup</text>
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<!-- filter&#45;&gt;mpileup -->
<g id="edge6" class="edge">
<title>filter&#45;&gt;mpileup</title>
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<!-- filter_indels -->
<g id="node8" class="node">
<title>filter_indels</title>
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<text text-anchor="middle" x="617" y="-116" font-family="sans" font-size="10.00">filter</text>
<text text-anchor="middle" x="617" y="-105" font-family="sans" font-size="10.00">indels</text>
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<!-- mpileup&#45;&gt;filter_indels -->
<g id="edge7" class="edge">
<title>mpileup&#45;&gt;filter_indels</title>
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<!-- join_populations -->
<g id="node14" class="node">
<title>join_populations</title>
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<text text-anchor="middle" x="617" y="-35.5" font-family="sans" font-size="10.00">join</text>
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<!-- mpileup&#45;&gt;join_populations -->
<g id="edge14" class="edge">
<title>mpileup&#45;&gt;join_populations</title>
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<!-- subsample -->
<g id="node9" class="node">
<title>subsample</title>
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<text text-anchor="middle" x="715.5" y="-110.5" font-family="sans" font-size="10.00">subsample</text>
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<!-- filter_indels&#45;&gt;subsample -->
<g id="edge8" class="edge">
<title>filter_indels&#45;&gt;subsample</title>
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<!-- variance_sliding -->
<g id="node10" class="node">
<title>variance_sliding</title>
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<text text-anchor="middle" x="816.5" y="-116" font-family="sans" font-size="10.00">variance</text>
<text text-anchor="middle" x="816.5" y="-105" font-family="sans" font-size="10.00">sliding</text>
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<!-- subsample&#45;&gt;variance_sliding -->
<g id="edge9" class="edge">
<title>subsample&#45;&gt;variance_sliding</title>
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<!-- merge -->
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<title>merge</title>
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<text text-anchor="middle" x="917" y="-110.5" font-family="sans" font-size="10.00">merge</text>
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<!-- variance_sliding&#45;&gt;merge -->
<g id="edge10" class="edge">
<title>variance_sliding&#45;&gt;merge</title>
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<!-- hp -->
<g id="node13" class="node">
<title>hp</title>
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<text text-anchor="middle" x="917" y="-164.5" font-family="sans" font-size="10.00">hp</text>
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<!-- variance_sliding&#45;&gt;hp -->
<g id="edge12" class="edge">
<title>variance_sliding&#45;&gt;hp</title>
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<!-- plot -->
<g id="node12" class="node">
<title>plot</title>
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<text text-anchor="middle" x="1015" y="-137.5" font-family="sans" font-size="10.00">plot</text>
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<!-- merge&#45;&gt;plot -->
<g id="edge11" class="edge">
<title>merge&#45;&gt;plot</title>
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<!-- hp&#45;&gt;plot -->
<g id="edge13" class="edge">
<title>hp&#45;&gt;plot</title>
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<!-- sync_filter_indels -->
<g id="node15" class="node">
<title>sync_filter_indels</title>
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<text text-anchor="middle" x="715.5" y="-41" font-family="sans" font-size="10.00">sync</text>
<text text-anchor="middle" x="715.5" y="-30" font-family="sans" font-size="10.00">filter indels</text>
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<!-- join_populations&#45;&gt;sync_filter_indels -->
<g id="edge15" class="edge">
<title>join_populations&#45;&gt;sync_filter_indels</title>
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<!-- sync_convert -->
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<title>sync_convert</title>
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<text text-anchor="middle" x="816.5" y="-41" font-family="sans" font-size="10.00">sync</text>
<text text-anchor="middle" x="816.5" y="-30" font-family="sans" font-size="10.00">convert</text>
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<!-- sync_filter_indels&#45;&gt;sync_convert -->
<g id="edge16" class="edge">
<title>sync_filter_indels&#45;&gt;sync_convert</title>
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<!-- sync_subsample -->
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<title>sync_subsample</title>
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<text text-anchor="middle" x="917" y="-41" font-family="sans" font-size="10.00">sync</text>
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<!-- sync_convert&#45;&gt;sync_subsample -->
<g id="edge17" class="edge">
<title>sync_convert&#45;&gt;sync_subsample</title>
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<!-- fst_sliding -->
<g id="node18" class="node">
<title>fst_sliding</title>
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<text text-anchor="middle" x="1015" y="-41" font-family="sans" font-size="10.00">fst</text>
<text text-anchor="middle" x="1015" y="-30" font-family="sans" font-size="10.00">sliding</text>
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<!-- sync_subsample&#45;&gt;fst_sliding -->
<g id="edge18" class="edge">
<title>sync_subsample&#45;&gt;fst_sliding</title>
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<!-- merge_fst_sliding -->
<g id="node19" class="node">
<title>merge_fst_sliding</title>
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<text text-anchor="middle" x="1105" y="-41" font-family="sans" font-size="10.00">merge</text>
<text text-anchor="middle" x="1105" y="-30" font-family="sans" font-size="10.00">fsts</text>
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<!-- fst_sliding&#45;&gt;merge_fst_sliding -->
<g id="edge19" class="edge">
<title>fst_sliding&#45;&gt;merge_fst_sliding</title>
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<!-- plot_fst -->
<g id="node20" class="node">
<title>plot_fst</title>
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<text text-anchor="middle" x="1195" y="-41" font-family="sans" font-size="10.00">plot</text>
<text text-anchor="middle" x="1195" y="-30" font-family="sans" font-size="10.00">fst</text>
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<!-- merge_fst_sliding&#45;&gt;plot_fst -->
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