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How to install

Download the latest stable R from https://cloud.r-project.org/ (possibly optional).

Install Bioconductor and sigbin package dependencies:

source("https://bioconductor.org/biocLite.R")
biocLite(c("Biostrings", "fastcluster", "dynamicTreeCut", "fields", "rgl", "Rcpp", "devtools"))

Install sigbin package directly from GitHub:

devtools::install_github("jirihon/sigbin")

Implemented functions

Following functions are implemented: dna_signal, hjorth_params, fasta_hjorth_params, sigbin and plot_sigbin_3d. Each function has a documentation entry and you can run its example code by example built-in function.

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Signal-based DNA sequence binning

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