How to install magpie on Windows10?

[antoinecomp]

I tried to install magpie on Windows10 with conda like it's recommended in the docs: pip install git+https://github.com/inspirehep/magpie.git@v2.0 but I had errors:

(base) C:\Users\antoi>pip install git+https://github.com/inspirehep/magpie.git@v2.0
...
error: Command "C:\MinGW\bin\gfortran.exe -Wall -g -Wall -g -shared build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqag.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqage.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqagi.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqagie.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqagp.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqagpe.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqags.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqagse.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqawc.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqawce.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqawf.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqawfe.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqawo.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqawoe.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqaws.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqawse.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqc25c.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqc25f.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqc25s.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqcheb.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqelg.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqk15.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqk15i.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqk15w.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqk21.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqk31.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqk41.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqk51.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqk61.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqmomo.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqng.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqpsrt.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqwgtc.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqwgtf.o build\temp.win-amd64-3.6\scipy\integrate\quadpack\dqwgts.o build\temp.win-amd64-3.6\scipy\integrate\mach\d1mach.o build\temp.win-amd64-3.6\scipy\integrate\mach\xerror.o -Lc:\mingw\lib\gcc\mingw32\6.3.0 -Lc:\mingw\lib -LC:\ProgramData\Anaconda3\libs -LC:\ProgramData\Anaconda3\PCbuild\amd64 -Lbuild\temp.win-amd64-3.6 -o build\temp.win-amd64-3.6\Release\.libs\libdqag.W7PDASVWOSXFFJ7HWJHZAUH5TQ2SL3GC.gfortran-win_amd64.dll -Wl,--allow-multiple-definition -Wl,--output-def,build\temp.win-amd64-3.6\Release\libdqag.W7PDASVWOSXFFJ7HWJHZAUH5TQ2SL3GC.gfortran-win_amd64.def -Wl,--export-all-symbols -Wl,--enable-auto-import -static -mlong-double-64" failed with exit status 1

    ----------------------------------------
Command "C:\ProgramData\Anaconda3\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\antoi\\AppData\\Local\\Temp\\pip-install-53gin2lu\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\Users\antoi\AppData\Local\Temp\pip-record-yzum5fyd\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\antoi\AppData\Local\Temp\pip-install-53gin2lu\scipy\

I don't know if I should add more of the error message. I didn't find any help googling the error on Internet.

I then tried to install it with from the version we find on bitbucket.org/wolverton/magpie/src/master/ but as it asks to build with Gradle, using the included Gradle wrapper (which will install Gradle on your system if needed): ./gradlew jar I think its specific to Ubuntu. I'm now trying to install it thanks to the precompiled version.

I'm also trying to get all the dependencies listed with in the setup.py file.

[jstypka]

@antoinecomp the bitbucket repo is not related to this one, it's different software. Not sure how to help you with the installation problems - I'd try to install the dependencies first one by one in the right versions and see which one is problematic. You can look into setup.py to check out all the dependencies.

[antoinecomp]

Okay for the bitbucket repo. All of the libraries I tested were not exactly what were provided in setup.py

libraries	Mine	setup.py
scipy	1.1.0	0.18
nltk	3.3	3.2
numpy	1.12	1.12
gensim	?	0.13
scikit-learn	?	0.18
keras	?	2.1.6
h5py	?	2.6
tensorflow	?	1.11.0

scipy is the first I tried. It caused problems. I don't know if it is the main source of them, It's the first I tried, but here is the error message:

(base) C:\Users\antoi>pip install scipy==0.18
Collecting scipy==0.18
  Downloading https://files.pythonhosted.org/packages/01/a1/dce70d47377d662aa4b0895df8431aee92cea6faefaab9dae21b0f901ded/scipy-0.18.0.tar.gz (13.2MB)
    100% |████████████████████████████████| 13.2MB 131kB/s
Building wheels for collected packages: scipy
  Running setup.py bdist_wheel for scipy ... error
  Complete output from command C:\ProgramData\Anaconda3\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\antoi\\AppData\\Local\\Temp\\pip-install-8qc2sgzx\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d C:\Users\antoi\AppData\Local\Temp\pip-wheel-gpplvpu9 --python-tag cp36:
  lapack_opt_info:
...
  ----------------------------------------
  Failed cleaning build dir for scipy
Failed to build scipy
Installing collected packages: scipy
  Running setup.py install for scipy ... error
...
,--enable-auto-import -static -mlong-double-64" failed with exit status 1

    ----------------------------------------
Command "C:\ProgramData\Anaconda3\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\antoi\\AppData\\Local\\Temp\\pip-install-8qc2sgzx\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\Users\antoi\AppData\Local\Temp\pip-record-jh50hqae\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\antoi\AppData\Local\Temp\pip-install-8qc2sgzx\scipy\

Let me know if it helps you understand what's wrong, @jalavik . I would love to use your software !

[why2lyj]

@antoinecomp
I use Window 7 64bit and hope can help you.
I installed Anaconda3-5.3.1-Windows-x86_64, deal to Anaconda3-5.3.1-Windows-x86_64 install Python version is 3.7, so I used Anaconda Prompt to install python3.6 (until now Tensorflow only support Python 3.6)
conda install python=3.6

after this, I manually installed all dependency packages by using Anaconda Prompt , and it works fine.