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Examples gallery #47

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wants to merge 82 commits into from
Closed

Examples gallery #47

wants to merge 82 commits into from

Commits on Sep 6, 2024

  1. Docstrings for storing HRFs in snirf

    @jccutler
    jccutler committed Sep 6, 2024
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Commits on Sep 8, 2024

  1. fix in datasets.get_colin27_segmentation which stumbled over subdirec… 

    …tories in the zip file
    @emiddell
    emiddell committed Sep 8, 2024
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  2. temporarily disable image reco in docs

    @emiddell
    emiddell committed Sep 8, 2024
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  3. fix in datasets.get_colin27_segmentation

    @emiddell
    emiddell committed Sep 8, 2024
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  4. validated example_plots & photogrammetry, minof updated docu, added C… 

    …ITATION.cff
    @avolu
    avolu committed Sep 8, 2024
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  5. Update Makefile

    @avolu
    avolu committed Sep 8, 2024
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  6. Update Makefile

    @avolu
    avolu committed Sep 8, 2024
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  7. Update README.md

    @avolu
    avolu committed Sep 8, 2024
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  8. enable image_reco example with updated flags for chosing dataset, hea… 

    …d_model and forward_model
    @emiddell
    emiddell committed Sep 8, 2024
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  9. minor fixes

    @avolu
    avolu committed Sep 8, 2024
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  10. add cedalion/vis/__init__.py

    @emiddell
    emiddell committed Sep 8, 2024
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  11. added a few example "Initial Contributors". to be completed after rel… 

    …ease
    @avolu
    avolu committed Sep 8, 2024
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  12. switch imagereco example to colin27

    @emiddell
    emiddell committed Sep 8, 2024
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  13. add more datasets and some more guidance to test_installation.ipynb

    @emiddell
    emiddell committed Sep 8, 2024
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  14. Update photogrammetric_optode_coregistration.ipynb

    @avolu
    avolu committed Sep 8, 2024
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  15. minor fixes

    @avolu
    avolu committed Sep 8, 2024
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  16. Update contributing_code.md

    @avolu
    avolu committed Sep 8, 2024
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  17. Update contributing_code.md

    @avolu
    avolu committed Sep 8, 2024
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  18. use derived surfaces from new colin27 segmentation in 10-10 example

    @emiddell
    emiddell committed Sep 8, 2024
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Commits on Sep 9, 2024

  1. Colin27 reference

    @jccutler
    jccutler committed Sep 9, 2024
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  2. Merge branch 'main' into josef

    @jccutler
    jccutler committed Sep 9, 2024
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  3. Create head_models.ipynb 

    a notebook to build on in the future, showing everything head model related
    @avolu
    avolu committed Sep 9, 2024
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  4. Docstrings relevant to Glm basis functions

    @jccutler
    jccutler committed Sep 9, 2024
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  5. Docstrings for glm fingertapping

    @jccutler
    jccutler committed Sep 9, 2024
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  6. Docstrings relevant to viz. examples notebook

    @jccutler
    jccutler committed Sep 9, 2024
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  7. added recording container overview with indexing documentation

    @avolu
    avolu committed Sep 9, 2024
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  8. Update recording.ipynb

    @avolu
    avolu committed Sep 9, 2024
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  9. Update recording.ipynb

    @avolu
    avolu committed Sep 9, 2024
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  10. Update recording.ipynb

    @avolu
    avolu committed Sep 9, 2024
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  11. progress on matching the scaling with qt-nirs

    @lauracarlton
    lauracarlton committed Sep 9, 2024
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  12. updates to use simple_scalp_plot

    @lauracarlton
    lauracarlton committed Sep 9, 2024
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  13. add doc_strings to quality functions

    @lauracarlton
    lauracarlton committed Sep 9, 2024
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  14. bugfix in OptodeSelector

    @emiddell
    emiddell committed Sep 9, 2024
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  15. replaced scalp plot implementation

    @emiddell
    emiddell committed Sep 9, 2024
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  16. normalization factor in psp and better cardiac extraction at lower sa… 

    …mpling rates
    @emiddell
    emiddell committed Sep 9, 2024
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  17. updates to motion correction example notebook

    @lauracarlton
    lauracarlton committed Sep 9, 2024
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  18. add contributors to synthetic_hrf.py

    @lauracarlton
    lauracarlton committed Sep 9, 2024
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  19. adapt scalp plots in notebooks

    @emiddell
    emiddell committed Sep 9, 2024
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  20. Merge branch 'main' into psp_eike

    @emiddell
    emiddell committed Sep 9, 2024
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  21. Merge remote-tracking branch 'origin/PSP-fix' into psp_eike

    @emiddell
    emiddell committed Sep 9, 2024
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  22. Merge remote-tracking branch 'origin/josef' into main

    @emiddell
    emiddell committed Sep 9, 2024
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Commits on Sep 10, 2024

  1. Recording docstrings

    @jccutler
    jccutler committed Sep 10, 2024
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  2. Merge branch 'main' into josef

    @jccutler
    jccutler committed Sep 10, 2024
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  3. Misc. docstrings 

    Standardizing formatting and adding docstrings to functions not specifically relevant to example notebooks
    @jccutler
    jccutler committed Sep 10, 2024
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  4. Merge pull request #40 from ibs-lab/josef 

    Docstrings for last notebooks and miscellaneous docstrings
    @emiddell
    emiddell authored Sep 10, 2024
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  5. Update finger_tapping_lda_classification.ipynb

    @avolu
    avolu committed Sep 10, 2024
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  6. Rename example notebooks and update in makefile for better order on d… 

    …ocs page
    @avolu
    avolu committed Sep 10, 2024
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  7. add missing voxels_from_segmentation function

    @harmening
    harmening committed Sep 10, 2024
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  8. Update Makefile

    @avolu
    avolu committed Sep 10, 2024
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  9. Update Makefile

    @avolu
    avolu committed Sep 10, 2024
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  10. Update Makefile

    @avolu
    avolu committed Sep 10, 2024
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  11. Update Makefile

    @avolu
    avolu committed Sep 10, 2024
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  12. Update Makefile

    @avolu
    avolu committed Sep 10, 2024
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  13. Update 50_finger_tapping_lda_classification.ipynb

    @avolu
    avolu committed Sep 10, 2024
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Commits on Sep 11, 2024

  1. Updated fingertapping notebook

    @avolu
    avolu committed Sep 11, 2024
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  2. added limitations note to notebook

    @avolu
    avolu committed Sep 11, 2024
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  3. bug fix to _psp_alternate so window times are compatible

    @lauracarlton
    lauracarlton committed Sep 11, 2024
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  4. more sensible parameters in glm basis functions example

    @emiddell
    emiddell committed Sep 11, 2024
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  5. intro notebooks for dataclasses, crs and head model

    @emiddell
    emiddell committed Sep 11, 2024
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  6. Merge remote-tracking branch 'origin/psp_eike' into psp_eike_integration

    @emiddell
    emiddell committed Sep 11, 2024
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  7. fix inverted logic in id_motion_refine

    @emiddell
    emiddell committed Sep 11, 2024
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  8. use units for splineSG parameter

    @emiddell
    emiddell committed Sep 11, 2024
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Commits on Sep 12, 2024

  1. fix counting of motion artifacts

    @emiddell
    emiddell committed Sep 12, 2024
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  2. add units to frame_size

    @emiddell
    emiddell committed Sep 12, 2024
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  3. add visualization to head model example

    @emiddell
    emiddell committed Sep 12, 2024
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  4. add WIP to title of motion and artefacts correction example

    @emiddell
    emiddell committed Sep 12, 2024
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  5. Revert "add WIP to title of motion and artefacts correction example" 

    This reverts commit a52c6a3.
    @emiddell
    emiddell committed Sep 12, 2024
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  6. add WIP to motion artefact example notebook

    @emiddell
    emiddell committed Sep 12, 2024
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  7. Merge branch 'psp_eike_integration2' into main

    @emiddell
    emiddell committed Sep 12, 2024
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  8. Update 21_data_quality_and_pruning.ipynb

    @avolu
    avolu committed Sep 12, 2024
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Commits on Sep 14, 2024

  1. add missing voxels_from_segmentation function

    @harmening @emiddell
    harmening authored and emiddell committed Sep 14, 2024
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  2. fix typo

    @emiddell
    emiddell committed Sep 14, 2024
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  3. add voxel class

    @harmening
    harmening committed Sep 14, 2024
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  4. Merge remote-tracking branch 'origin/hm-bugfix' into main

    @emiddell
    emiddell committed Sep 14, 2024
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  5. add Voxels to cdc.__init__

    @emiddell
    emiddell committed Sep 14, 2024
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Commits on Sep 23, 2024

  1. Created examples gallery 

    Uses nbsphinx gallery function
Removed existing examples page
    @jccutler
    jccutler committed Sep 23, 2024
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  2. Enabled collapsible subcategories in sidebar

    @jccutler
    jccutler committed Sep 23, 2024
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  3. Broken thumbnail bugfix

    @jccutler
    jccutler committed Sep 23, 2024
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  4. Remove temp images

    @jccutler
    jccutler committed Sep 23, 2024
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Commits on Oct 4, 2024

  1. Synthetic artifacts first commit

    @jccutler
    jccutler committed Oct 4, 2024
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  2. Scale spike by duration

    @jccutler
    jccutler committed Oct 4, 2024
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  3. Move artifact generation into dedicated functions

    @jccutler
    jccutler committed Oct 4, 2024
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