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Currently we use an ECO subset that restricts to "manual" terms.
This includes terms that are likely too narrow experimentally:
ECO:0005652 ! methidiumpropyl-ethylenediaminetetraacetic acid iron (II) footprinting evidence used in manual assertion
ECO:0006041 ! genetically encoded fluorescent ion concentration sensor assay evidence used in manual assertion
As well as narrow subclasses of IC
ECO:0007756 ! curator inference from Britannica used in manual assertion
ECO:0007754 ! curator inference from Wikipedia used in manual assertion
ECO:0007755 ! curator inference from MedlinePlus encyclopedia used in manual assertion
In theory it is fine is people want to use granular ECO terms, these will all roll up the GAF codes
But is this actually our policy? If we allow people to use any granularity then the majority will annotate to broad terms that are equivalent to GAF codes and the end results will be frustrating to use for users that do want granular codes, because the annotation will be at inconsistent levels.
We should make an intentional decision about whether which levels of granularity are MUST, SHOULD, SHOULD NOT, MAY, and reflect this in the subsets available to editors.
The text was updated successfully, but these errors were encountered:
We asked curators about ECO usage on the 2024-01-30 annotation call.
Some groups do use some of the more granular codes. For example:
** Xenbase - more granular IMP codes
** CACAO - easier for students to use the more granular, methods-specific evidence
Let's prioritize this issue and associated ECO work on the 2024-01-14 managers/projects call.
Currently we use an ECO subset that restricts to "manual" terms.
This includes terms that are likely too narrow experimentally:
ECO:0005652 ! methidiumpropyl-ethylenediaminetetraacetic acid iron (II) footprinting evidence used in manual assertion
ECO:0006041 ! genetically encoded fluorescent ion concentration sensor assay evidence used in manual assertion
As well as narrow subclasses of IC
ECO:0007756 ! curator inference from Britannica used in manual assertion
ECO:0007754 ! curator inference from Wikipedia used in manual assertion
ECO:0007755 ! curator inference from MedlinePlus encyclopedia used in manual assertion
In theory it is fine is people want to use granular ECO terms, these will all roll up the GAF codes
But is this actually our policy? If we allow people to use any granularity then the majority will annotate to broad terms that are equivalent to GAF codes and the end results will be frustrating to use for users that do want granular codes, because the annotation will be at inconsistent levels.
We should make an intentional decision about whether which levels of granularity are MUST, SHOULD, SHOULD NOT, MAY, and reflect this in the subsets available to editors.
The text was updated successfully, but these errors were encountered: