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Dear developer,
I am trying to acquire the dosage VCF file converted from .gen format. However, qctools and other conversion can only output the non-dosage VCF, which cannot meet my demand of the following investigation. Then I find out that maybe Pysam can do this, but I am not quite familiar with the complex code.
I want to know if this VCF-Simplify can achieve this function?
Many thanks!
Hope for your reply!
The text was updated successfully, but these errors were encountered:
Please share your VCF file (both dosage and non-dosage) so I can tell if it can do what you want it to do.
For a more controlled and custom VCF parsing you may use https://github.com/everestial/vcfparser but this application is still waiting for few more changes and updates.
Dear developer,
I am trying to acquire the dosage VCF file converted from .gen format. However, qctools and other conversion can only output the non-dosage VCF, which cannot meet my demand of the following investigation. Then I find out that maybe Pysam can do this, but I am not quite familiar with the complex code.
I want to know if this VCF-Simplify can achieve this function?
Many thanks!
Hope for your reply!
The text was updated successfully, but these errors were encountered: