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# Define sample names which will be used to make panel of normals.PON_SAMPLES= ['sample1', 'sample2']
rulecreate_read_count_panel_of_normals:
input:
# Required inputs in either hdf5 or tsv format.# Inputs should be generated by running CollectReadCounts.count_files=expand('result/{sample}/{sample}.counts.hdf5', sample=PON_SAMPLES)
# Optional inputs. Omit if unused.# GC-content annotated-intervals file from AnnotateIntervals.# If specified, explicit GC-bias correction will be performed on the panel samples,# and identically for subsequent case samples.annotated_intervals=''output:
# Required output PON file. MUST be hdf5 format.'pon.hdf5'params:
# Optional parameters. Omit if unused.extra='',
threads: 1log: 'logs/gatk/create-read-count-panel-of-normals/PON.log'wrapper:
'http://dohlee-bio.info:9193/gatk/cnv/create-read-count-panel-of-normals'