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BioBERT Large Results
Jinhyuk Lee edited this page Jan 21, 2020
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These are the results of using BioBERT v1.2 (+Pubmed 1M, Large). Improved results are in bold.
Dataset | BioBERT v1.1 (reported) | BioBERT v1.2 |
---|---|---|
NCBI disease | 88.22/91.25/89.71 | xx.xx/xx.xx/xx.xx |
BC5CDR disease | 86.47/87.84/87.15 | xx.xx/xx.xx/xx.xx |
BC5CDR drug/chem. | 93.68/93.26/93.47 | xx.xx/xx.xx/xx.xx |
BC4CHEMD | 92.80/91.92/92.36 | xx.xx/xx.xx/xx.xx |
BC2GM | 84.32/85.12/84.72 | xx.xx/xx.xx/xx.xx |
JNLPBA | 72.24/83.56/77.49 | xx.xx/xx.xx/xx.xx |
LINNAEUS | 90.77/85.83/88.24 | xx.xx/xx.xx/xx.xx |
Species-800 | 72.80/75.36/74.06 | xx.xx/xx.xx/xx.xx |
Dataset | BioBERT v1.1 (reported) | BioBERT v1.2 |
---|---|---|
GAD | 77.32/82.68/79.83 | xx.xx/xx.xx/xx.xx |
EU-ADR | 77.86/83.55/79.74 | xx.xx/xx.xx/xx.xx |
Dataset | BioBERT v1.1 (reported) | BioBERT v1.2 |
---|---|---|
BioASQ 4b | 27.95/44.10/34.72 | xx.xx/xx.xx/xx.xx |
BioASQ 5b | 46.00/60.00/51.64 | xx.xx/xx.xx/xx.xx |
BioASQ 6b | 42.86/57.77/48.43 | xx.xx/xx.xx/xx.xx |