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Resource on Information Theory, Statistical Mechanics, Generative and Diffusion Models, Coding Theory

books

The Mathematical Theory of Communication, Claude Shannon and Warren Weaver, 1964

Information Theory, Robert B. Ash, 1965

Information Theory, Inference, and Learning Algorithms, David MacKay, 2005 (Ver 7)

Elements of Information Theory, Thomas M. Cover, Joy A. Thomas, 2006

Entropy and Information Theory, Robert M. Gray, Stanford U., First Edition, 2023

Physical Nature of Information, G. Falkovich, Lectures, June 5, 2023

Introduction to Information Theory and Applications, F. Bavaud, JC Chappelier, J Kohlas, 2005

Statistical Mechanics: Entropy, Order Parameters and Complexity, JP Sethna, 2006

Farwell to Entropy: Statistical Thermodynamics based on Information, Arieh Ben-Naim, 2008

Diffusion Processes and Stochastic Calculus, Fabrice Baudoin, 2019

Statistical Physics and Information Theory, Neri Merhav, Technion, Lecture notes

Stochastic Differential Equations: An Introduction with Applications Fifth Edition, Corrected Printing, Bernt Oksendal, 2000

Numerical Solution of Stochastic Differential Equations, Peter E. Kloeden, Eckhart Platten, 1999

The Principles of Deep Learning Theory: An Effective Theory Approach to Understanding Neural Networks, Daniel A. Roberts, Sho Yaida, Boris Hanin, 2021

Latent Variable Models: Introduction to Factor Analysis and Structural Equation Analysis, John C. Loehlin, 2004

Brownian Motion and Stochastic Flow Systems, J. Michael Harrison, 1985

Modern Coding Theory, T. Richardson, R. Urbanke, 2007

Coding Theory: A First Course, Henk C.A. van Tilborg, 1993

An Introduction to Kolmogorov Complexity and its Applications, Ming Li, Paul Vitanyi, Fourth Edition, 2019

articles

Differential Space, Norbert Wiener, 1923

The Mathematical Theory of Communication, Claude Shannon, The Bell System Technical Journal, 1948

Communication Theory of Secrecy Systems, Claude Shannon, The Bell System Technical Journal, 1949

Claude Shannon - Collected Papers: Part A: Communication Theory, Information Theory, Cryptography, Part B: Computers, Circuits, Games, Part C: Genetics, PhD Thesis

On Information and Sufficiency, S. Kullback, R.A. Leibler, 1951

Information Theory and Statistical Mechanics, Part I, E.T. Jaynes, Stanford U., 1957

Information Theory and Statistical Mechanics, Part II, E.T. Jaynes, Stanford U., 1957

Entropy, Information and Quantum Measurements, Goran Lindblad, Royal Institute of Technology, Sweden, 1973

Generative and diffusion models

Introduction to Diffusion Models for Deep Learning, Ryan O'Connor, 2022 (online blog)

What are Diffusion Models? Lilian Weng, OpenAI, 2021 (online blog)

Diffusion Models for Video Generation, Lilian Weng, OpenAI, 2024 (online blog)

Generative Modeling by Estimating Gradients of the Data Distribution, Yang Song, Stanford, 2021 (online blog)

Deep Unsupervised Learning Using Nonequilibrium Thermodynamics, Jascha Sohl-Dickstein et al, Stanford U., 2015

Tutorial on Diffusion Models for Imaging and Vision, Stanley Chan, 2024

On Error Propagation of Diffusion Models, Y. Li, Michaela van der Schaar, U of Cambridge, 2024

Step By Step Diffusion : An Elementary Tutorial, P. Nakkiran et al, 2024

Understanding Diffusion Models: Unified Perspective, Calvin Luo, Google Brain, 2022

Lightweight Diffusion Models: A Survey, W. Song et al, 2024

Perspectives on Diffusion, Sander Dieleman, 2023

Introduction to Variational Methods for Graphical Models, M.I. Jordan et al, 1999

Diffusion Models Beat GANs on Image Synthesis, Prafulla Dharival, Alex Nichol, OpenAI, 2021

Generative Models of Images and Neural Networks, William Smith Peebles, PhD Thesis, 2023

Generative Modeling by Estimating Gradients of the Data Distribution, Y. Song et al, Stanford U., 2020

Score-Based Generative Modeling through Stochastic Differential Equations, Yang Song et al, Stanford U., 2021

Learning General Gaussian Mixtures with Efficient Score Matching, S. Chen et al, Harvard U, 2024

Diffusion Shroedinger Bridge with Application to Score-Based Generative Modeling, Valentin de Bortoli et al, U. of Oxford, 2023

Improved Techniques for Training Score-Based Generative Models, Y. Song, S. Ermon, 2020

Denoising Diffusion Probabilistic Models, J. Ho et al, UC Berkeley, 2020

Denoising Diffusion Implicit Models, J. Song et al, ICLR 2021

Flow Matching for Generative Modeling, Yaron Lipman et al, Meta FAIR, 2023

Interpreting and Improving Diffusion Models from an Optimization Perspective, F. Permenter et al, 2024

Sampling, Diffusions, and Stochastic Localization, Andrea Montanari, 2023

Extracting Training Data From Diffusion Models, Nicholas Carlini et al, Deep Mind, 2023

High-Dimensional Dynamics of Generalization Error in Neural Networks, M.S. Advani et al, 2017

On The Mathematics of Diffusion Models, David McAllester, 2023

Reverse Time Diffusion Equation Models, Brian D.O. Anderson, 1982

Text-to-image Diffusion Models in Generative AI: A Survey, Chenshuang Zhang, Chaoning Zhang, Mengchun Zhang, In So Kweon, 2023

GLIDE: Towards Photorealistic Image Generation and Editing with Text-Guided Diffusion Models, Alex Nichol et al, 2022

Navier-Stokes, Fluid Dynamics, Image and Video Inpainting, M. Bertalmio et al, 2001

The Fokker-Planck equation

The Fokker-Planck Equation: Methods of Solution and Application, 2nd edition, H. Risken, 1996

Fokker-Planck Equation, Wikipedia

Klaus Schulten's lecture notes on non-equilibrium statistical mechanics, 1999

Generalized Fokker-Planck Equation: Derivation and Exact Solutions, SI Denisov et al, 2009

Probability Flow solution of the Fokker-Planck Equation, Nicholas Boffi, Eric Venden Eijnden, 2023

Solving the inverse problem of time independent Fokker–Planck equation with a self supervised neural network method, W. Liu et al, Nature, 2021

The Diffusion Transformer

Scalable Diffusion Models with Transformers, William Peebles, UC Berkeley, 2022

Masked Diffusion Transformer is a Strong Image Synthesizer, S. Gao et al Sea AI Lab, Nankai U., 2023

DiT-3D: Exploring Plain Diffusion Transformers for 3D Shape Generation, S. Mo et al, Huawei, NeurIPS 2023

FiT: Flexible Vision Transformer for Diffusion Model, Z. Lu et al, Feb 2024

DiffiT: Diffusion Vision Transformers for Image Generation, A. Hatamizadeh et al, 2024

Diffusion Transformer Explained: Exploring the architecture that brought transformers into image generation, Mario Larcher, Feb 28, 2024

Diffusion Transformer (DiT) Models: A Beginner’s Guide, Akruti Acharya, March 18, 2024

DiTFastAttn: Attention Compression for Diffusion Transformer Models, Zhihang Yuan et al, 2024

Scaling Rectified Flow Transformers for High-Resolution Image Synthesis, Patrick Esser et al, Stability AI, 2024

Variational Autoencoders

Tutorial on Variational Autoencoders, Carl Doersch, Carnegie Mellon, UC Berkeley, 2021

Introduction to Variational Autoencoders, Diedrik P. Kingma, Max Welling, 2019

Auto-Encoding Variational Bayes, Diedrik P. Kingma, Max Welling, 2022

The Sparse Autoencoder, Andrew Ng, Lecture Notes CS294A

Fisher information metric

Fisher information metric, Wikipedia

Methods of Information Geometry, Shun-ichi Amari, Hiroshi Nagaoka, 1993

An elementary introduction to information geometry, Frank Nielsen, Sony Corp., 2020

Algebraic and geometric methods in statistics, Paolo Gibilisco, Eva Riccomagno, Maria Piera Rogantin, Henry P. Wynn, 2010

Far-from-Equilibrium Measurements of Thermodynamic Length, EH Feng, GE Crooks, UC Berkeley, 2008

Approximations to the Fisher Information Metric of Deep Generative Models for Out-Of-Distribution Detection, S. Dauncey et al, 2024

The information geometry of mirror descent, G. Raskutti, S. Mukherjee, 2014

Statistical Mechanics of Neural Networks

Statistical Mechanics of Deep Linear Neural Networks: The Back-Propagating Kernel Renormalization, Qianyi Li, Haim Sompolinsky, 2021

The Principles of Deep Learning Theory: An Effective Theory Approach to Understanding Neural Networks, Daniel A. Roberts, Sho Yaida, Boris Hanin, 2021

Thermodynamics and Computation

Thermodynamics of Computations with Absolute Irreversibility, Unidirectional Transitions, and Stochastic Computation Times, G. Manzano et al, 2024

Thermodynamic Linear Algebra, Maxwell Aifer et al, Normal Computing Corporation, 2024

Conformal Prediction algorithms and techniques

Conformal prediction under ambiguous ground truth, David Stutz et al, 2023, DeepMind

related repo: https://github.com/google-deepmind/uncertain_ground_truth

Percolation Theory and Mazes

Maze Proof Establishes a ‘Backbone’ for Statistical Mechanics, L. Quanta Magazine, 2024

Backbone Exponent for Two Dimensional Percolation, Pierre Nollin et al, 2024

Near-Critical Percolation in Two Dimensions, Pierre Nollin, 2007

Continuum Limits for Critical Percolation and Other Stochastic Geometric Models, M. Aizenman, 1998

Critical Exponents for Two-Dimensional Percolation, S. Smirnov et al, 2001

Conductivity Exponent and Backbone Dimension in 2D Percolation, Peter Grassberger, 2018

Information Theory Lectures

Harvard 2022, Gregory Falkovich

Lecture 1

Lecture 2

Lecture 3, Part 1

Lecture 3, Part 2

Lecture 4

Lecture 5, Part 1

Lecture 5, Part 2

Lecture 6, Part 1

Lecture 6, Part 2

Lecture 7, Part 1

Lecture 7, Part 2

Lecture 8, Part 1

Lecture 8, Part 2

Lecture 9, Part 1

Lecture 9, Part 2

Lecture 10, Part 1

Lecture 10, Part 2

Lecture 11, Epilogue

Gaussian Processes Lectures

Nando Freitas, Machine Learning, UBC 2013-2014

Introduction to Gaussian Processes and Gaussian Process Regression, Nando Freitas, CBSC 540, UBC Jan 31, 2013

Statistical Mechanics for Deep Learning

Statistical Mechanics of Deep Learning at Kavli Institute for Theoretical Physics, Haim Sompolinsky (Hebrew Univ), 2023