Merge pull request #648 from jakirkham/add_scipy

Add scipy

recipes/scipy/bld.bat

@@ -0,0 +1,17 @@
+set COMP_DIR=C:\Program Files (x86)\IntelSWTools\compilers_and_libraries\windows
+
+set DISTUTILS_USE_SDK=1
+set MSSdk=1
+
+if %PY_VER%==3.5 (
+REM This one is essential for getting DLL linkage on Py3.5+
+    set "PY_VCRUNTIME_REDIST=%LIBARARY_BIN%\vcruntime140.dll"
+    set VS=vs2015
+) else (
+    set VS=vs2010
+)
+
+call "%COMP_DIR%\bin\ifortvars.bat" %INTEL_ARCH% %VS%
+
+%PYTHON% setup.py install
+if errorlevel 1 exit 1

recipes/scipy/build.sh

@@ -0,0 +1,34 @@
+#!/bin/bash
+
+
+# Letting SciPy set these for us.
+# This may not be the best long term strategy,
+# but it works fine to get our first build.
+unset LDFLAGS
+
+# Depending on our platform, shared libraries end with either .so or .dylib
+if [[ `uname` == 'Darwin' ]]; then
+    DYLIB_EXT=dylib
+else
+    DYLIB_EXT=so
+fi
+
+# If OpenBLAS is being used, we should be able to find the libraries.
+# As OpenBLAS now will have all symbols that BLAS or LAPACK have,
+# create libraries with the standard names that are linked back to
+# OpenBLAS. This will make it easy for NumPy to find it.
+test -f "${PREFIX}/lib/libopenblas.a" && ln -fs "${PREFIX}/lib/libopenblas.a" "${PREFIX}/lib/libblas.a"
+test -f "${PREFIX}/lib/libopenblas.a" && ln -fs "${PREFIX}/lib/libopenblas.a" "${PREFIX}/lib/liblapack.a"
+test -f "${PREFIX}/lib/libopenblas.${DYLIB_EXT}" && ln -fs "${PREFIX}/lib/libopenblas.${DYLIB_EXT}" "${PREFIX}/lib/libblas.${DYLIB_EXT}"
+test -f "${PREFIX}/lib/libopenblas.${DYLIB_EXT}" && ln -fs "${PREFIX}/lib/libopenblas.${DYLIB_EXT}" "${PREFIX}/lib/liblapack.${DYLIB_EXT}"
+
+$PYTHON setup.py install
+
+# Need to clean these up as we don't want them as part of the NumPy package.
+# If these are part of a BLAS (e.g. ATLAS), this won't cause us any problems
+# as those would have been existing packages and `conda-build` would have
+# ignored packaging those files anyways.
+rm -f "${PREFIX}/lib/libblas.a"
+rm -f "${PREFIX}/lib/liblapack.a"
+rm -f "${PREFIX}/lib/libblas.${DYLIB_EXT}"
+rm -f "${PREFIX}/lib/liblapack.${DYLIB_EXT}"

recipes/scipy/meta.yaml

@@ -0,0 +1,62 @@
+{% set version = "0.17.1" %}
+
+{% set variant = "openblas" %}
+
+
+package:
+  name: scipy
+  version: {{ version }}
+
+source:
+  fn: scipy-{{ version }}.tar.gz
+  url: https://pypi.io/packages/source/s/scipy/scipy-{{ version }}.tar.gz
+  md5: 8987b9a3e3cd79218a0a423b21c8e4de
+
+build:
+  number: 200
+  # We lack openblas on Windows, and therefore can't build scipy there either currently.
+  skip: true  # [win]
+  features:
+    - blas_{{ variant }}
+
+requirements:
+  build:
+    - gcc
+    - python
+    - cython
+    - blas 1.1 {{ variant }}
+    - openblas  0.2.18*
+    - numpy     x.x
+  run:
+    - libgcc
+    - python
+    - blas 1.1 {{ variant }}
+    - openblas  0.2.18*
+    - numpy     x.x
+
+test:
+  requires:
+    - nose
+  imports:
+    - scipy
+    - scipy.integrate.vode
+    - scipy.linalg._fblas
+    - scipy.linalg._flapack
+    - scipy.sparse.linalg.eigen.arpack._arpack
+    - scipy.sparse.linalg.isolve._iterative
+
+about:
+  home: http://www.scipy.org/
+  license: BSD 3-Clause
+  license_file: LICENSE.txt
+  summary: Scientific Library for Python
+  description: |
+    SciPy is a Python-based ecosystem of open-source software for mathematics,
+    science, and engineering.
+  doc_url: http://www.scipy.org/docs.html
+  dev_url: https://github.com/scipy/scipy
+
+extra:
+  recipe-maintainers:
+    - jakirkham
+    - msarahan

recipes/scipy/run_test.py

@@ -0,0 +1,75 @@
+import sys
+
+import scipy
+import scipy.cluster._hierarchy
+import scipy.cluster._vq
+import scipy.fftpack._fftpack
+import scipy.fftpack.convolve
+import scipy.integrate._dop
+import scipy.integrate._odepack
+import scipy.integrate._quadpack
+import scipy.integrate._test_multivariate
+import scipy.integrate._test_odeint_banded
+import scipy.integrate.lsoda
+import scipy.integrate.vode
+import scipy.interpolate._fitpack
+import scipy.interpolate._interpolate
+import scipy.interpolate._ppoly
+import scipy.interpolate.dfitpack
+import scipy.interpolate.interpnd
+import scipy.io.matlab.mio5_utils
+import scipy.io.matlab.mio_utils
+import scipy.io.matlab.streams
+import scipy.linalg._calc_lwork
+import scipy.linalg._decomp_update
+import scipy.linalg._fblas
+import scipy.linalg._flapack
+import scipy.linalg._flinalg
+import scipy.linalg._interpolative
+import scipy.linalg._solve_toeplitz
+import scipy.linalg.cython_blas
+import scipy.linalg.cython_lapack
+import scipy.ndimage._nd_image
+import scipy.ndimage._ni_label
+import scipy.odr.__odrpack
+import scipy.optimize._cobyla
+import scipy.optimize._group_columns
+import scipy.optimize._lbfgsb
+import scipy.optimize._lsq.givens_elimination
+import scipy.optimize._minpack
+import scipy.optimize._nnls
+import scipy.optimize._slsqp
+import scipy.optimize._zeros
+import scipy.optimize.minpack2
+import scipy.optimize.moduleTNC
+import scipy.signal._max_len_seq_inner
+import scipy.signal._spectral
+import scipy.signal.sigtools
+import scipy.signal.spline
+import scipy.sparse._csparsetools
+import scipy.sparse._sparsetools
+import scipy.sparse.csgraph._min_spanning_tree
+import scipy.sparse.csgraph._reordering
+import scipy.sparse.csgraph._shortest_path
+import scipy.sparse.csgraph._tools
+import scipy.sparse.csgraph._traversal
+import scipy.sparse.linalg.dsolve._superlu
+import scipy.sparse.linalg.eigen.arpack._arpack
+import scipy.sparse.linalg.isolve._iterative
+import scipy.spatial._distance_wrap
+import scipy.spatial.ckdtree
+import scipy.spatial.qhull
+import scipy.special._ellip_harm_2
+import scipy.special._ufuncs
+import scipy.special._ufuncs_cxx
+import scipy.special.specfun
+import scipy.stats._rank
+import scipy.stats.mvn
+import scipy.stats.statlib
+import scipy.stats.vonmises_cython
+
+import scipy.stats
+import scipy.special
+
+
+sys.exit(not scipy.test().wasSuccessful())