Bump rc #154

dopplershift · 2022-10-21T18:36:38Z

Checklist

Used a personal fork of the feedstock to propose changes
Bumped the build number (if the version is unchanged)
Reset the build number to 0 (if the version changed)
Re-rendered with the latest conda-smithy (Use the phrase @conda-forge-admin, please rerender in a comment in this PR for automated rerendering)
Ensured the license file is being packaged.

Ok, let's see how 4.9.1 rc1 builds. My plan is to also see if some of those other patches can be removed, or if they need to be upstreamed.

…nda-forge-pinning 2022.10.21.15.17.15

conda-forge-linter · 2022-10-21T18:36:43Z

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe) and found it was in an excellent condition.

conda-forge-linter · 2022-10-21T18:43:06Z

Hi! This is the friendly automated conda-forge-linting service.

I wanted to let you know that I linted all conda-recipes in your PR (recipe) and found some lint.

Here's what I've got...

For recipe:

Failed to even lint the recipe, probably because of a conda-smithy bug 😢. This likely indicates a problem in your meta.yaml, though. To get a traceback to help figure out what's going on, install conda-smithy and run conda smithy recipe-lint . from the recipe directory.

conda-forge-linter · 2022-10-21T18:44:00Z

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe) and found it was in an excellent condition.

dopplershift · 2022-10-21T19:22:03Z

So linux and Windows are failing with:

-- Configuring done
CMake Error at libsrc/CMakeLists.txt:37 (add_library):
  Cannot find source file:

    D:/bld/libnetcdf_1666379359313/work/build/libsrc/putget.c

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .mpp .m .M .mm .ixx .cppm .h
  .hh .h++ .hm .hpp .hxx .in .txx .f .F .for .f77 .f90 .f95 .f03 .hip .ispc


CMake Error at nc_test/CMakeLists.txt:31 (ADD_EXECUTABLE):
  Cannot find source file:

    D:/bld/libnetcdf_1666379359313/work/build/nc_test/test_get.c

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .mpp .m .M .mm .ixx .cppm .h
  .hh .h++ .hm .hpp .hxx .in .txx .f .F .for .f77 .f90 .f95 .f03 .hip .ispc


CMake Error at libsrc/CMakeLists.txt:37 (add_library):
  No SOURCES given to target: netcdf3


CMake Error at nc_test/CMakeLists.txt:31 (ADD_EXECUTABLE):
  No SOURCES given to target: nc_test
-- Cache values

@WardF?

dopplershift · 2022-10-21T19:45:07Z

Ok, with m4 added to the build tools (osx already had it installed) (@WardF I don't think you intended for m4 to be needed?), we now get to this error on linux for x86_64 and aarch64:

[ 19%] Building C object libnczarr/CMakeFiles/nczarr.dir/zutil.c.o
[ 19%] Building C object oc2/CMakeFiles/oc2.dir/xxdr.c.o
In file included from /home/conda/feedstock_root/build_artifacts/libnetcdf_1666381046563/_build_env/x86_64-conda-linux-gnu/sysroot/usr/include/string.h:637,
                 from /home/conda/feedstock_root/build_artifacts/libnetcdf_1666381046563/work/libnczarr/zincludes.h:22,
                 from /home/conda/feedstock_root/build_artifacts/libnetcdf_1666381046563/work/libnczarr/zutil.c:13:
/home/conda/feedstock_root/build_artifacts/libnetcdf_1666381046563/work/libnczarr/zutil.c: In function 'ncz_nctype2dtype':
/home/conda/feedstock_root/build_artifacts/libnetcdf_1666381046563/work/libnczarr/zutil.c:544:26: error: called object 'strlen' is not a function or function pointer
  544 |     if(dnamep) *dnamep = strdup(dname);
      |                          ^~~~~~
/home/conda/feedstock_root/build_artifacts/libnetcdf_1666381046563/work/libnczarr/zutil.c:533:68: note: declared here
  533 | ncz_nctype2dtype(nc_type nctype, int endianness, int purezarr, int strlen, char** dnamep)
      |                                                                ~~~~^~~~~~
make[2]: *** [libnczarr/CMakeFiles/nczarr.dir/build.make:356: libnczarr/CMakeFiles/nczarr.dir/zutil.c.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:2608: libnczarr/CMakeFiles/nczarr.dir/all] Error 2

I wonder if that's related to the strdup patch I thought wasn't needed any more...I'll wait to see all the build results first. I'll note that ppc64le passes, but is the only arch disabling -O3.

dopplershift · 2022-10-21T20:31:37Z

Ok, well that strdup patch accomplished nothing, so I'll pop that back off.

WardF · 2022-10-21T21:04:36Z

Leaving a breadcrumb for myself here to pick this back up if/when I get distracted by other tasks.

WardF · 2022-10-21T21:05:21Z

This will be a known issue in rc1 since we are about to release that, but I will iterate on it for rc2.

…nda-forge-pinning 2022.10.28.22.34.20

Closes conda-forge#155

Depend on libxml2

reinstates the removed linux fix, correctly fixes OSX

…ForgeAutomergeUpdate

dopplershift · 2022-11-08T19:49:07Z

@WardF Just two test failures on the linux x86_64 nompi build, no more build failures:

2022-11-08T18:42:20.5330242Z         Start  31: ncdump_tst_bom
2022-11-08T18:42:20.5340121Z 31: Test command: /usr/bin/bash "-c" "export srcdir=$SRC_DIR/ncdump;export TOPSRCDIR=$SRC_DIR;$SRC_DIR/build-shared/ncdump/tst_bom.sh tst_bom.sh "
2022-11-08T18:42:20.5345025Z 31: Working Directory: $SRC_DIR/build-shared/ncdump
2022-11-08T18:42:20.5349045Z 31: Test timeout computed to be: 1500
2022-11-08T18:42:20.5483356Z 31: 
2022-11-08T18:42:20.5513641Z 31: *** Generate a cdl file with leading UTF-8 BOM.
2022-11-08T18:42:20.5539130Z 31: *** Verify .nc file
2022-11-08T18:42:20.5725427Z 31: 6a7,69
2022-11-08T18:42:20.5730326Z 31: > }
2022-11-08T18:42:20.5734514Z 31: > riables:
2022-11-08T18:42:20.5738438Z 31: > 	float var(dim) ;
2022-11-08T18:42:20.5742716Z 31: > 		var:units = "m/s" ;
2022-11-08T18:42:20.5746504Z 31: > 
2022-11-08T18:42:20.5750609Z 31: > // global attributes:
2022-11-08T18:42:20.5754458Z 31: > 		:title = "for testing groups" ;
2022-11-08T18:42:20.5758346Z 31: > data:
2022-11-08T18:42:20.5770376Z 31: > 
2022-11-08T18:42:20.5770829Z 31: >  var = 1, 2, 3, 4 ;
2022-11-08T18:42:20.5771107Z 31: > 
2022-11-08T18:42:20.5771347Z 31: > group: g1 {
2022-11-08T18:42:20.5771653Z 31: >   dimensions:
2022-11-08T18:42:20.5771941Z 31: >   	dim = 1 ;
2022-11-08T18:42:20.5772211Z 31: >   variables:
2022-11-08T18:42:20.5772505Z 31: >   	float var(dim) ;
2022-11-08T18:42:20.5772817Z 31: >   		var:units = "km/hour" ;
2022-11-08T18:42:20.5773111Z 31: > 
2022-11-08T18:42:20.5773381Z 31: >   // group attributes:
2022-11-08T18:42:20.5773701Z 31: >   		:title = "in first group" ;
2022-11-08T18:42:20.5773992Z 31: >   data:
2022-11-08T18:42:20.5774254Z 31: > 
2022-11-08T18:42:20.5774502Z 31: >    var = 1 ;
2022-11-08T18:42:20.5774790Z 31: >   } // group g1
2022-11-08T18:42:20.5775063Z 31: > 
2022-11-08T18:42:20.5775318Z 31: > group: g2 {
2022-11-08T18:42:20.5775615Z 31: >   dimensions:
2022-11-08T18:42:20.5775886Z 31: >   	dim = 2 ;
2022-11-08T18:42:20.5776164Z 31: >   variables:
2022-11-08T18:42:20.5776441Z 31: >   	float var(dim) ;
2022-11-08T18:42:20.5776754Z 31: >   		var:units = "cm/sec" ;
2022-11-08T18:42:20.5777037Z 31: > 
2022-11-08T18:42:20.5777310Z 31: >   // group attributes:
2022-11-08T18:42:20.5777618Z 31: >   		:title = "in second group" ;
2022-11-08T18:42:20.5777924Z 31: >   data:
2022-11-08T18:42:20.5778168Z 31: > 
2022-11-08T18:42:20.5778435Z 31: >    var = 1, 2 ;
2022-11-08T18:42:20.5781092Z 31: > 
2022-11-08T18:42:20.5781387Z 31: >   group: g3 {
2022-11-08T18:42:20.5781685Z 31: >     dimensions:
2022-11-08T18:42:20.5781960Z 31: >     	dim = 3 ;
2022-11-08T18:42:20.5782255Z 31: >     variables:
2022-11-08T18:42:20.5782534Z 31: >     	float var(dim) ;
2022-11-08T18:42:20.5782851Z 31: >     		var:units = "mm/msec" ;
2022-11-08T18:42:20.5783352Z 31: >     	float var2(/dim, /g2/dim, dim) ;
2022-11-08T18:42:20.5783654Z 31: > 
2022-11-08T18:42:20.5783932Z 31: >     // group attributes:
2022-11-08T18:42:20.5784259Z 31: >     		:title = "in third group" ;
2022-11-08T18:42:20.5784566Z 31: >     data:
2022-11-08T18:42:20.5784818Z 31: > 
2022-11-08T18:42:20.5785090Z 31: >      var = 1, 2, 3 ;
2022-11-08T18:42:20.5785360Z 31: > 
2022-11-08T18:42:20.5785619Z 31: >      var2 =
2022-11-08T18:42:20.5785880Z 31: >   1, 2, 3,
2022-11-08T18:42:20.5786155Z 31: >   4, 5, 6,
2022-11-08T18:42:20.5786418Z 31: >   7, 8, 9,
2022-11-08T18:42:20.5786697Z 31: >   10, 11, 12,
2022-11-08T18:42:20.5786970Z 31: >   13, 14, 15,
2022-11-08T18:42:20.5787254Z 31: >   16, 17, 18,
2022-11-08T18:42:20.5787525Z 31: >   19, 20, 21,
2022-11-08T18:42:20.5787809Z 31: >   22, 23, 24 ;
2022-11-08T18:42:20.5788096Z 31: >     } // group g3
2022-11-08T18:42:20.5788337Z 31: >   } // group g2
2022-11-08T18:42:20.5809284Z  40/233 Test  #31: ncdump_tst_bom ........................***Failed    0.05 sec

and

2022-11-08T18:42:20.4593481Z         Start  58: ncdump_tst_nccopy4
2022-11-08T18:42:20.4596281Z 58: Test command: /usr/bin/bash "-c" "export srcdir=$SRC_DIR/ncdump;export TOPSRCDIR=$SRC_DIR;$SRC_DIR/build-shared/ncdump/tst_nccopy4.sh tst_nccopy4.sh "
2022-11-08T18:42:20.4597071Z 58: Working Directory: $SRC_DIR/build-shared/ncdump
2022-11-08T18:42:20.4597481Z 58: Test timeout computed to be: 1500
2022-11-08T18:42:20.4597787Z 58: 
2022-11-08T18:42:20.4598363Z 58: *** Testing groups.
2022-11-08T18:42:20.4598713Z 58: *** creating nested group file tst_group_data.nc...ok.
2022-11-08T18:42:20.4599109Z 58: *** Tests successful!
2022-11-08T18:42:20.4599372Z 58: 
2022-11-08T18:42:20.4599663Z 58: *** Testing enums.
2022-11-08T18:42:20.4600007Z 58: *** creating enum test file tst_enum_data.nc...ok.
2022-11-08T18:42:20.4600362Z 58: *** Tests successful!
2022-11-08T18:42:20.4600629Z 58: 
2022-11-08T18:42:20.4600895Z 58: *** Testing compound types.
2022-11-08T18:42:20.4601252Z 58: *** creating compound test file tst_comp.nc...ok.
2022-11-08T18:42:20.4601589Z 58: *** Tests successful!
2022-11-08T18:42:20.4601867Z 58: 
2022-11-08T18:42:20.4602145Z 58: *** Testing compound types some more.
2022-11-08T18:42:20.4602542Z 58: *** creating another compound test file tst_comp2.nc...ok.
2022-11-08T18:42:20.4603388Z 58: *** Tests successful!
2022-11-08T18:42:20.4603698Z 58: 
2022-11-08T18:42:20.4604299Z 58: *** Testing netCDF-4 features of nccopy on ncdump/*.nc files
2022-11-08T18:42:20.4604747Z 58: *** Test nccopy tst_comp.nc copy_of_tst_comp.nc ...
2022-11-08T18:42:20.4605156Z 58: *** compare  with copy_of_tst_comp.cdl
2022-11-08T18:42:20.4605598Z 58: *** Test nccopy tst_comp2.nc copy_of_tst_comp2.nc ...
2022-11-08T18:42:20.4605975Z 58: *** compare  with copy_of_tst_comp2.cdl
2022-11-08T18:42:20.4606363Z 58: *** Test nccopy tst_enum_data.nc copy_of_tst_enum_data.nc ...
2022-11-08T18:42:20.4606737Z 58: *** compare  with copy_of_tst_enum_data.cdl
2022-11-08T18:42:20.4607109Z 58: *** Test nccopy tst_fillbug.nc copy_of_tst_fillbug.nc ...
2022-11-08T18:42:20.4607529Z 58: *** compare  with copy_of_tst_fillbug.cdl
2022-11-08T18:42:20.4607905Z 58: *** Test nccopy tst_group_data.nc copy_of_tst_group_data.nc ...
2022-11-08T18:42:20.4609974Z 58: *** compare  with copy_of_tst_group_data.cdl
2022-11-08T18:42:20.4610350Z 58: *** Test nccopy tst_nans.nc copy_of_tst_nans.nc ...
2022-11-08T18:42:20.4610709Z 58: *** compare  with copy_of_tst_nans.cdl
2022-11-08T18:42:20.4611631Z 58: *** Test nccopy tst_opaque_data.nc copy_of_tst_opaque_data.nc ...
2022-11-08T18:42:20.4617074Z 58: *** compare  with copy_of_tst_opaque_data.cdl
2022-11-08T18:42:20.4617478Z 58: *** Test nccopy tst_solar_1.nc copy_of_tst_solar_1.nc ...
2022-11-08T18:42:20.4631343Z 58: *** compare  with copy_of_tst_solar_1.cdl
2022-11-08T18:42:20.4631748Z 58: *** Test nccopy tst_solar_2.nc copy_of_tst_solar_2.nc ...
2022-11-08T18:42:20.4655657Z 58: *** compare  with copy_of_tst_solar_2.cdl
2022-11-08T18:42:20.4664150Z 58: *** Test nccopy tst_solar_cmp.nc copy_of_tst_solar_cmp.nc ...
2022-11-08T18:42:20.4690825Z 58: *** compare  with copy_of_tst_solar_cmp.cdl
2022-11-08T18:42:20.4691536Z 58: *** Test nccopy tst_special_atts.nc copy_of_tst_special_atts.nc ...
2022-11-08T18:42:20.4698348Z 58: *** compare  with copy_of_tst_special_atts.cdl
2022-11-08T18:42:20.4784035Z 58: *** Test nccopy tst_string_data.nc copy_of_tst_string_data.nc ...
2022-11-08T18:42:20.4792653Z 58: *** compare  with copy_of_tst_string_data.cdl
2022-11-08T18:42:20.4797373Z 58: *** Creating compressible test files tst_inflated.nc, tst_inflated4.nc...ok.
2022-11-08T18:42:20.4797769Z 58: *** Tests successful!
2022-11-08T18:42:20.4798300Z 58: *** Test nccopy -d1 can compress a classic format file ...
2022-11-08T18:42:20.4814143Z 58: *** Test nccopy -d1 can compress a netCDF-4 format file ...
2022-11-08T18:42:20.4821611Z 58: *** Test nccopy -d1 -s can compress a classic model netCDF-4 file even more ...
2022-11-08T18:42:20.4826009Z 58: *** Test nccopy -d1 -s can compress a netCDF-4 file even more ...
2022-11-08T18:42:20.4828367Z 58: *** Test nccopy -d0 turns off compression, shuffling of compressed, shuffled file ...
2022-11-08T18:42:20.4830613Z 58: *** Testing nccopy -d1 -s on ncdump/*.nc files
2022-11-08T18:42:20.4831143Z 58: *** Test nccopy -d1 -s tst_comp.nc copy_of_tst_comp.nc ...
2022-11-08T18:42:20.4835488Z 58: *** Test nccopy -d1 -s tst_comp2.nc copy_of_tst_comp2.nc ...
2022-11-08T18:42:20.4841004Z 58: *** Test nccopy -d1 -s tst_enum_data.nc copy_of_tst_enum_data.nc ...
2022-11-08T18:42:20.5083586Z 58: *** Test nccopy -d1 -s tst_fillbug.nc copy_of_tst_fillbug.nc ...
2022-11-08T18:42:20.5443041Z 58: *** Test nccopy -d1 -s tst_group_data.nc copy_of_tst_group_data.nc ...
2022-11-08T18:42:20.5898947Z 58: 1,3c1
2022-11-08T18:42:20.5904126Z 58: < netcdf copy_of_tst_group_data {
2022-11-08T18:42:20.5908702Z 58: < dimensions:
2022-11-08T18:42:20.5912966Z 58: < 	dim = 4 ;
2022-11-08T18:42:20.5917789Z 58: ---
2022-11-08T18:42:20.5940479Z 58: > netcdf tst_bom {
2022-11-08T18:42:20.5940951Z 58: 4a3,8
2022-11-08T18:42:20.5941235Z 58: > 	float f ;
2022-11-08T18:42:20.5941513Z 58: > data:
2022-11-08T18:42:20.5941767Z 58: > 
2022-11-08T18:42:20.5942037Z 58: >  f = 1 ;
2022-11-08T18:42:20.5942299Z 58: > }
2022-11-08T18:42:20.5942565Z 58: > riables:
2022-11-08T18:42:20.5948075Z  41/233 Test  #58: ncdump_tst_nccopy4 ....................***Failed    0.84 sec

which I'll note ran simultaneously.

dopplershift · 2022-11-08T20:02:47Z

Diagnosed and reported upstream as Unidata/netcdf-c#2551.

dopplershift · 2022-11-21T23:11:58Z

Ok, all but 1 of the failures with 4.9.1rc2 is from conda-forge's tests because DAP4 isn't ending up enabled even though we pass -DENABLE_DAP=ON. Waiting to see if that's intentional at this point.

The other failure was hitting another test race condition that's been filed upstream as Unidata/netcdf-c#2562.

dopplershift · 2022-11-22T00:04:09Z

Ok, with an updated tag the only failures are due to test race conditions.

WardF · 2022-11-22T19:15:16Z

Fun. Thanks. I'll take a look at the fenceposting in autotools and cmake, to hopefully avoid similar failures.

Bump rc

dopplershift added 3 commits October 21, 2022 12:20

Switch to libnetcdf_rc label for rc branch

a695b98

MNT: Re-rendered with conda-build 3.22.0, conda-smithy 3.21.2, and co…

020b9c4

…nda-forge-pinning 2022.10.21.15.17.15

Bump to 4.9.1-rc1

4e75676

dopplershift requested review from WardF, groutr, kmuehlbauer, mingwandroid, msarahan, ocefpaf and xylar as code owners October 21, 2022 18:36

dopplershift force-pushed the bump-rc branch from 92a7a57 to 270ad7f Compare October 21, 2022 18:43

dopplershift changed the base branch from main to rc October 21, 2022 18:44

dopplershift closed this Oct 21, 2022

dopplershift reopened this Oct 21, 2022

Fix version metdata

0bff282

dopplershift force-pushed the bump-rc branch from 270ad7f to 0bff282 Compare October 21, 2022 19:05

Add m4 to build dependencies

9b1adbb

dopplershift force-pushed the bump-rc branch from 6487480 to 9b1adbb Compare October 21, 2022 20:34

WardF self-assigned this Oct 21, 2022

conda-forge-webservices[bot] and others added 3 commits October 29, 2022 09:40

MNT: Re-rendered with conda-build 3.22.0, conda-smithy 3.21.2, and co…

6293722

…nda-forge-pinning 2022.10.28.22.34.20

Depend on libxml2

90020c5

Closes conda-forge#155

Merge pull request conda-forge#156 from jschueller/xml

bcc6e61

Depend on libxml2

agrossfield and others added 5 commits October 31, 2022 08:25

fix conda-forge#155

15c56b3

Bump the build number

a440793

Merge pull request conda-forge#158 from agrossfield/main

ec5b066

reinstates the removed linux fix, correctly fixes OSX

[ci skip] [skip ci] [cf admin skip] ***NO_CI*** admin migration Conda…

665a097

…ForgeAutomergeUpdate

Add patch from Unidata/netcdf-c#2550 to fix build

b4b32c2

dopplershift mentioned this pull request Nov 8, 2022

Rename variable to avoid function name conflict Unidata/netcdf-c#2550

Merged

dopplershift mentioned this pull request Nov 8, 2022

conda-forge build test failure Unidata/netcdf-c#2551

Closed

conda-forge-curator bot and others added 2 commits November 17, 2022 23:06

[ci skip] [skip ci] [cf admin skip] ***NO_CI*** admin migration DotConda

0afb915

Update to 4.9.1rc2

b416a3e

dopplershift mentioned this pull request Nov 21, 2022

Conda-forge test failures redux Unidata/netcdf-c#2562

Open

Update hash for re-do of rc2

5873406

dopplershift added 2 commits December 14, 2022 13:12

Merge branch 'main' into bump-rc

00c860e

Remove unneeded Windows patch

7ebad3b

dopplershift mentioned this pull request Dec 21, 2022

S3 support #125

Closed

Remove another unneeded Windows patch

807e459

dopplershift force-pushed the bump-rc branch from 415168f to 807e459 Compare December 23, 2022 01:49

dopplershift merged commit 47839bd into conda-forge:rc Dec 23, 2022

dopplershift deleted the bump-rc branch December 23, 2022 21:54

dopplershift added a commit to dopplershift/libnetcdf-feedstock that referenced this pull request Feb 10, 2023

Merge pull request conda-forge#154 from dopplershift/bump-rc

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Bump rc

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Bump rc #154

Bump rc #154

dopplershift commented Oct 21, 2022

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Bump rc #154

Bump rc #154

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dopplershift commented Oct 21, 2022

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conda-forge-linter commented Oct 21, 2022

conda-forge-linter commented Oct 21, 2022

dopplershift commented Oct 21, 2022

dopplershift commented Oct 21, 2022 • edited Loading

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WardF commented Oct 21, 2022

WardF commented Oct 21, 2022

dopplershift commented Nov 8, 2022 • edited Loading

dopplershift commented Nov 8, 2022

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WardF commented Nov 22, 2022

dopplershift commented Oct 21, 2022 •

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dopplershift commented Oct 21, 2022 •

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dopplershift commented Nov 8, 2022 •

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dopplershift commented Nov 21, 2022 •

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