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using python and 3d image #382
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This looks like some windows issue loading the DLLs. I had a quick look at a related stack overflow: https://stackoverflow.com/questions/42863505/dll-load-failed-when-importing-pyqt5. From browsing through this:
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Napari runs when I launched it but the plugin is only available for embeddings (and cache), the dock widgets are not available. I will reboot in a sec and let you know, thanks a lot, |
I would suggest to use the Then the plugins will be available in napari. (We will also release this version soon, but we need to document a bit more before this.) |
Ok great ! Super helpful :) , looking to use it a lot, especially for 3d nucleus, annotations are a pain and take forever using Labkit ... My 3d model is pretty good but working to make a refined model, hence the idea to run inferences using my model then using your plugin for refinements, then training a refined model (if metrics are good) . That will save me a lotttttttttttttttttttttttttttttttttttttt of time :) |
I reboot my machine ,Error is gone :) But using the point_prompts in 3d the automatic segmentation outputs are not great ... Thanks a lot :) |
Thinking, do images needs any pre -filters ? something to normalize the images or else ? |
I've always had better results with the box prompts, than the point prompts. Maybe you could try that? |
These are way too many points. You need to give point prompts object by object when you use the annotator. Please watch the video for seeing how to use it: https://www.youtube.com/watch?v=ket7bDUP9tI&list=PLwYZXQJ3f36GQPpKCrSbHjGiH39X4XjSO&index=1 (And if you want to segment multiple objects at a time you can use box prompts, it's also shown in the video) |
Ok thanks, Seems ok in 3D, but the masks diffuse too much on the out of focus (mask are getting larger toward the end / beginning), Does the automatic segmentation is available in 3D or not yet ? Thanks a lot, |
Ok, thanks for the feedback! Will follow up on this next week. (We have seen this issue to, it should be possible to fix it by updating some parameters, will share details as soon as I can).
It's implemented, but there are different versions of this and not everything is fully tested. I will follow up next week. |
Thanks, looking for the update :) great support ! |
Hi,
I install all using python (3.10)
The widget launch, I select the image (tiff ) 3d,
then :
I remove and reinstalled pyqt but still ... same error .
Any ideas how to solve the problem ?
Thanks,
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