fix subsample depth

chanzuckerberg · Oct 1, 2024 · 105c419 · 105c419
1 parent c49eed2
commit 105c419
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/long-read-mngs/run.wdl b/workflows/long-read-mngs/run.wdl
@@ -1280,7 +1280,7 @@ workflow czid_long_read_mngs {
         String library_type = "RNA"
         String guppy_basecaller_setting = "hac" # fast, hac, super
 
-        Int subsample_depth = 4000000 # should be 4x the number of reads desired
+        Int subsample_depth = 1000000 
 
         File minimap_host_db
         File minimap_human_db