docs: Add Cryoet Workflow article

chanzuckerberg · Oct 21, 2024 · 14ef47b · 14ef47b
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diff --git a/docs/_static/css/custom.css b/docs/_static/css/custom.css
@@ -375,3 +375,11 @@ div .centered-quote {
   max-width: 24rem;
   margin: auto;
 }
+
+/* Side by side videos */
+.sidevideos {
+  display: flex;
+  flex-direction: row;
+  margin-top: 20px;
+  width: 33%;
+}
diff --git a/docs/_static/img/aligned_tilt_series.mp4 b/docs/_static/img/aligned_tilt_series.mp4
diff --git a/docs/_static/img/aligned_tilt_series.png b/docs/_static/img/aligned_tilt_series.png
diff --git a/docs/_static/img/annotation_movie.mp4 b/docs/_static/img/annotation_movie.mp4
diff --git a/docs/_static/img/assembled.png b/docs/_static/img/assembled.png
diff --git a/docs/_static/img/denoising_workflow.png b/docs/_static/img/denoising_workflow.png
diff --git a/docs/_static/img/full_workflow.png b/docs/_static/img/full_workflow.png
diff --git a/docs/_static/img/image_processing_workflow.png b/docs/_static/img/image_processing_workflow.png
diff --git a/docs/_static/img/projected_images.png b/docs/_static/img/projected_images.png
diff --git a/docs/_static/img/raw_tilt_series.mp4 b/docs/_static/img/raw_tilt_series.mp4
diff --git a/docs/_static/img/raw_tilt_series.png b/docs/_static/img/raw_tilt_series.png
diff --git a/docs/_static/img/sample_preparation.png b/docs/_static/img/sample_preparation.png
diff --git a/docs/_static/img/subtomogram_averaging.png b/docs/_static/img/subtomogram_averaging.png
diff --git a/docs/_static/img/tilt_schemes.png b/docs/_static/img/tilt_schemes.png
diff --git a/docs/_static/img/tilt_series_workflow.png b/docs/_static/img/tilt_series_workflow.png
diff --git a/docs/_static/img/tomogram.mp4 b/docs/_static/img/tomogram.mp4
diff --git a/docs/_static/img/tomogram.png b/docs/_static/img/tomogram.png
diff --git a/docs/_static/img/workflow_timeline.png b/docs/_static/img/workflow_timeline.png
diff --git a/docs/_toc.yml b/docs/_toc.yml
@@ -17,5 +17,6 @@ subtrees:
     - entries:
       - file: intro_cryoet.md
       - file: cryoet_data_portal_docsite_data.md
+      - file: cryoet_workflow.md
   - file: cryoet_data_portal_docsite_faq.md
     title: "FAQ"
diff --git a/docs/about.md b/docs/about.md
@@ -22,4 +22,11 @@ Learn about the capabilities and acquisition of CryoET data
 
 Guide on how the CryoET Data Portal is organized
 :::
+
+:::{grid-item-card} CryoET Data Workflow
+:link: cryoet-workflow
+:link-type: ref
+
+Overview of the data pipeline from acquisition to analysis
+:::
 ::::
diff --git a/docs/cryoet_workflow.md b/docs/cryoet_workflow.md