Prepare for 1.15.0 release (#1227) #126
Workflow file for this run
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| name: Build and Deploy Docsite | |
| on: | |
| push: | |
| tags: | |
| - '*' | |
| workflow_dispatch: # Used to make post-release docfixes | |
| permissions: | |
| contents: write | |
| env: | |
| CELLXGENE_CENSUS_USERAGENT: "CZI-test" | |
| jobs: | |
| build-and-deploy: | |
| concurrency: ci-${{ github.ref }} | |
| runs-on: single-cell-8c64g-runner | |
| steps: | |
| - name: Checkout 🛎️ | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install Python deps 🔧 | |
| run: | | |
| python -m pip install -U pip setuptools wheel | |
| pip install -r ./api/python/cellxgene_census/scripts/requirements-dev.txt | |
| pip install -e './api/python/cellxgene_census/[experimental,doc]' | |
| mkdir -p docsite | |
| touch docsite/.nojekyll | |
| - name: Install Pandoc | |
| run: | | |
| sudo apt-get install -y pandoc | |
| - name: Install misc deps | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcairo2-dev rsync | |
| - name: Build Sphinx website | |
| run: | | |
| cd docs/ | |
| make clean && make html | |
| cp -r _build/html/* ../docsite/. | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| extra-repositories: https://tiledb-inc.r-universe.dev | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| working-directory: ./api/r/cellxgene.census | |
| extra-repositories: https://tiledb-inc.r-universe.dev | |
| extra-packages: any::rcmdcheck, any::styler, any::roxygen2, any::pkgdown, any::BiocManager, | |
| needs: check | |
| cache: true | |
| - name: Build pkgdown website | |
| run: | | |
| cd api/r/cellxgene.census | |
| mv _vignettes vignettes | |
| Rscript -e 'BiocManager::install("scater")' | |
| Rscript -e 'pkgdown::build_site()' | |
| cd ../../../ | |
| mkdir -p docsite/r | |
| cp -r api/r/cellxgene.census/docs/* docsite/r/. | |
| - name: Deploy 🚀 | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| folder: docsite # The folder the action should deploy. | |
| branch: gh-pages |