minor update

bgreenwell · Feb 22, 2021 · e36c804 · e36c804
1 parent ba5f8d9
commit e36c804
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Showing 32 changed files with 267 additions and 182 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -13,3 +13,4 @@
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 ^TODO\.md$
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diff --git a/.Rproj.user/34EA04DA/rmd-outputs b/.Rproj.user/34EA04DA/rmd-outputs
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+~/Desktop/gotran/README.html
 /private/var/folders/24/k1n3dpcd2p5glqf8r4232qqc8k86md/T/Rtmpnjvf0L/preview-18107651b43c3.dir/fastshap-vs-iml-iBreakDown.html
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diff --git a/.Rproj.user/34EA04DA/sources/prop/3AF07C6D b/.Rproj.user/34EA04DA/sources/prop/3AF07C6D
@@ -1,4 +1,6 @@
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+    "cursorPosition": "3,19",
+    "scrollLine": "0",
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diff --git a/.Rproj.user/34EA04DA/sources/prop/41B40DB8 b/.Rproj.user/34EA04DA/sources/prop/41B40DB8
@@ -1,5 +1,7 @@
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-    "scrollLine" : "5"
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diff --git a/.Rproj.user/34EA04DA/sources/prop/INDEX b/.Rproj.user/34EA04DA/sources/prop/INDEX
@@ -39,6 +39,7 @@
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 ~%2FDesktop%2Fdevel%2Ffastshap%2Fman%2Ffastshap-package.Rd="192533F6"
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 ~%2FDesktop%2Fdevel%2Ffastshap%2Fnotebooks%2Fbibliography.bib="FC2A6186"
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@@ -85,6 +86,7 @@
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 ~%2FDesktop%2Fforceplot.R="6C1303D7"
+~%2FDesktop%2Fgotran%2FREADME.md="7FFEC7BA"
 ~%2FDesktop%2Fmatrix-subsetting-benchmarks.cpp="1B9A1FA5"
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diff --git a/.Rproj.user/shared/notebooks/9999330F-README/1/s/chunks.json b/.Rproj.user/shared/notebooks/9999330F-README/1/s/chunks.json
@@ -1 +1 @@
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diff --git a/.Rproj.user/shared/notebooks/paths b/.Rproj.user/shared/notebooks/paths
@@ -3,7 +3,6 @@
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@@ -26,6 +25,7 @@
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diff --git a/.github/.gitignore b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -0,0 +1,86 @@
+# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
+# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+on:
+  push:
+    branches:
+      - main
+      - master
+  pull_request:
+    branches:
+      - main
+      - master
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: windows-latest, r: 'release'}
+          - {os: macOS-latest, r: 'release'}
+          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          r-version: ${{ matrix.config.r }}
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        if: runner.os != 'Windows'
+        uses: actions/cache@v2
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
+        run: |
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+
+      - name: Install dependencies
+        run: |
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("rcmdcheck")
+        shell: Rscript {0}
+
+      - name: Check
+        env:
+          _R_CHECK_CRAN_INCOMING_REMOTE_: false
+        run: |
+          options(crayon.enabled = TRUE)
+          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
+        shell: Rscript {0}
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@main
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check
diff --git a/.travis.yml b/.travis.yml
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: fastshap
 Type: Package
 Title: Fast Approximate Shapley Values
-Version: 0.0.5
+Version: 0.0.5.9000
 Authors@R: person("Brandon", "Greenwell", email = "greenwell.brandon@gmail.com", role =
          c("aut", "cre"), comment = c(ORCID = "0000-0002-8120-0084"))
 Description: Computes fast (relative to other implementations) approximate 
@@ -36,4 +36,4 @@ Suggests:
 LinkingTo: 
     Rcpp,
     RcppArmadillo
-RoxygenNote: 7.0.2
+RoxygenNote: 7.1.1
diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,13 @@
+# fastshap 0.0.5.9000
+
+## Bug fixes
+
+* The `force_plot()` function should now be compatible with **shap** (>=0.36.0); thanks to @hfshr and @jbwoillard for reporting [(#12)](https://github.com/bgreenwell/fastshap/issues/12).
+
+## Miscellaneous
+
+* Switched from Travis-CI to GitHub Actions for continuous integration.
+
 # fastshap 0.0.5
 
 ## Bug fixes